FC872832

Overview
NameFC872832
Unique NameFC872832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length898
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872832_ssr47 microsatellite FC872832_ssr47:47..62. BLAST: Citrus ESTs to Prunus persica proteins V1
FC872832_ssr64 microsatellite FC872832_ssr64:64..87. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10075 contig Ccv1_Contig10075:1..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 1.390e-49
Identity = 115/222 (51.80%), Postives = 153/222 (68.92%), Query Frame = 2
Query:  134 NHQVEDNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRN---TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFTLDPFAGNLGWFDYEDLLYLLQQN-YISAAEWLLLH 787
            N+ V+D   NM  +SQ YP DV T   IV   GE  +PKRR++K      + +GG    +KRKLT EQ  +LEM FG+EHKLES+RKD+LAAELGLDPRQVAVWFQNRRAR K K++EE Y  LK +H+NVVV+K RLESEV  LKE+L  AE+EI++++E +EG S N+P ++    ++  ++PF  D   G+ G  DY+ L Y + +N YI  AEW+ L+
Sbjct:    2 NYTVDDQ--NMAFISQLYP-DVYTQ--IVQPVGEVKQPKRRRKKTKGSVASADGGNGLFRKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREIQRLAERVEGGSSNSPISS-SVSVEANETPFFGDYKVGDDG-DDYDHLFYPVPENSYIDEAEWMSLY 216          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.999e-44
Identity = 107/225 (47.56%), Postives = 150/225 (66.67%), Query Frame = 2
Query:  134 NHQVEDNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRKRNTN----------GNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFTLDPFAGNLGWFDYEDLLYLLQQNYISAAEWL 778
            N  V+D+  N++L+SQ YP+ V TP  +VPQQG  +KP RR+++++ +          GNG FR   KRKL+ EQ  +LE+ F ++HKLES+RKD+LA+ELGLDPRQVAVWFQNRRAR K K++E+ Y  LK A+E  VVEK RL+SEV  LKE+L  AE+EI+++++ +EG   N+P ++  T      +PF  D   G  G  D E+LLY    +YI   +W+
Sbjct:    3 NQNVDDH--NLLLISQLYPN-VYTP--LVPQQGGEAKPTRRRKRKSKSVVVAEEGENEGNGWFR---KRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREIQRLAKRVEGTLSNSPISSSVTIEANHTTPFFGDYDIGFDGEAD-ENLLY--SPDYIDGLDWM 216          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.820e-41
Identity = 98/218 (44.95%), Postives = 133/218 (61.01%), Query Frame = 2
Query:  164 MVLLSQFYPSDVLTPTG--IVPQQ---GEPSKPKRRQRKRNTNGNGGFRA---------LKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFTLDPFAGNLGWFDYEDLLYLLQQNYISAAEW 775
            M+L SQ YP          I+  Q   GE SKP +R+RKR + G+              L+KRKLT EQ  +LE  FGNEHKLES RK+K+A ELGLDPRQVAVWFQNRRAR K KK+EE YA LK  H+NVV+ + +LES++  L E+LS A+ EI+K+SE +E +  N+ S+++  + +   + F L P        +Y    Y+L  NY+ + E+
Sbjct:   11 MMLGSQVYPYTTQPQNSHCIIVNQIDGGEESKPVKRRRKRRSKGSSATNEEDVAEIGGMLRKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLEEMPTNSSSSSLSVEANNAPTDFELAPET------NYNIPFYMLDNNYLQSMEY 222          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.560e-29
Identity = 88/238 (36.97%), Postives = 131/238 (55.04%), Query Frame = 2
Query:  149 DNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRK--RNTNGNGGFRAL-----KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKM-----SELIEG-----ISLNNPSATIPTDMDTVDSPFTLDP--FAGNLGWFDY---EDLLYLLQQNYI---SAAEWLLLH 787
            + +    + + +  + +L  +G V  QGE  + +RR+R+  R   G GG   +     KKR+L+ EQ E+LE+ F  E KLE+ RK  LA+ELGLDP+QVAVWFQNRRAR K+K +EE ++ LK AH+  ++ K  LE+EV  LKE+L VAE+E++++     S    G     + L    A +     +  S  T  P  F G  G  D+   +DL+Y+ +       S  EW  L+
Sbjct:    6 EKQQQQQMFASYVDASLLAASGEV--QGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRLRSAAGSHTASGEGGDIMGLGGSGACVAGSPSSSFSTGTCQPPSFGGGGGGGDHLGDDDLVYVPEYGGYADNSVVEWFSLY 241          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.930e-29
Identity = 70/158 (44.30%), Postives = 104/158 (65.82%), Query Frame = 2
Query:  149 DNKSNMVLLSQFYPSDVLTPTGIVPQQGEPSKPKRRQRK--RNTNGNGGFRAL-----KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKM 601
            + +    + + +  + +L  +G V  QGE  + +RR+R+  R   G GG   +     KKR+L+ EQ E+LE+ F  E KLE+ RK  LA+ELGLDP+QVAVWFQNRRAR K+K +EE ++ LK AH+  ++ K  LE+EV  LKE+L VAE+E++++
Sbjct:    6 EKQQQQQMFASYVDASLLAASGEV--QGERPRARRRRRRGARCVGGGGGGGEVDGGDPKKRRLSDEQVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHLENEVLRLKERLVVAEEEVRRL 161          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.811e-26
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  230 GEPSKPKRRQRKRN--------TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMS 604
            GE  K ++R+R++            +GG    KKR+L+ EQA  LEM F  E KLE+ RK +LAAELGLD +QVAVWFQNRRAR K+K +EE +A L++AH+ VV++   LE+E+  LKE+L+  E+E  K++
Sbjct:   29 GEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLA 161          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.811e-26
Identity = 64/133 (48.12%), Postives = 90/133 (67.67%), Query Frame = 2
Query:  230 GEPSKPKRRQRKRN--------TNGNGGFRALKKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTAHENVVVEKTRLESEVATLKEKLSVAEKEIKKMS 604
            GE  K ++R+R++            +GG    KKR+L+ EQA  LEM F  E KLE+ RK +LAAELGLD +QVAVWFQNRRAR K+K +EE +A L++AH+ VV++   LE+E+  LKE+L+  E+E  K++
Sbjct:   29 GEQKKARQRRRRKVKPEAAAALAGESGGDEQAKKRRLSDEQARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVLQNCHLETELLKLKERLADVEEEKAKLA 161          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HAT5_ARATH (Homeobox-leucine zipper protein HAT5 OS=Arabidopsis thaliana GN=HAT5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.356e-20
Identity = 63/152 (41.45%), Postives = 83/152 (54.61%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSPFTLDPFAGNLGWFDYEDLL 736
            KKR+LT EQ  LLE  F  E+KLE +RK +LA +LGL PRQVAVWFQNRRAR KTK++E  Y  LK+        ++++V++  +L SEV +L EKL   ++            + N P   +P        P  LDP   N      ED L
Sbjct:   68 KKRRLTTEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSTYDQLLSNYDSIVMDNDKLRSEVTSLTEKLQGKQE------------TANEPPGQVP-------EPNQLDPVYINAAAIKTEDRL 200          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.958e-19
Identity = 59/133 (44.36%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSP 679
            KKR+LTAEQ ++LE  F  E+KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  LK A       H  ++ +  RL ++V +L EKL   E               +  SATI T    VD P
Sbjct:   86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKE--------------TSPSSATITTAAQEVDQP 204          
BLAST of FC872832 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.958e-19
Identity = 59/133 (44.36%), Postives = 76/133 (57.14%), Query Frame = 2
Query:  302 KKRKLTAEQAELLEMHFGNEHKLESDRKDKLAAELGLDPRQVAVWFQNRRARDKTKKIEETYATLKTA-------HENVVVEKTRLESEVATLKEKLSVAEKEIKKMSELIEGISLNNPSATIPTDMDTVDSP 679
            KKR+LTAEQ ++LE  F  E+KLE +RK +LA  LG+ PRQVAVWFQNRRAR KTK++E  +  LK A       H  ++ +  RL ++V +L EKL   E               +  SATI T    VD P
Sbjct:   86 KKRRLTAEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKE--------------TSPSSATITTAAQEVDQP 204          
The following BLAST results are available for this feature:
BLAST of FC872832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
ATB40_ARATH1.390e-4951.80Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
ATB21_ARATH2.999e-4447.56Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]
ATB53_ARATH1.820e-4144.95Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]
HOX14_ORYSI3.560e-2936.97Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX14_ORYSJ7.930e-2944.30Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX12_ORYSJ4.811e-2648.12Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HOX12_ORYSI4.811e-2648.12Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HAT5_ARATH1.356e-2041.45Homeobox-leucine zipper protein HAT5 OS=Arabidopsi... [more]
HOX5_ORYSJ1.958e-1944.36Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI1.958e-1944.36Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH09ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872832 ID=FC872832; Name=FC872832; organism=Citrus clementina; type=EST; length=898bp
GGGGACACTTCTCGAGCTGGAGACACATTACCAATTTACCATATCCATAT
ATATATATATATTCACACACACACACACACACACACATATTTGAGAGAGA
TTTATGATCAGAGAAATGATCGTAACAAACACGAATCATCAAGTTGAAGA
TAACAAAAGTAATATGGTCTTGCTTTCCCAGTTTTACCCTTCTGATGTTC
TCACACCAACTGGAATCGTTCCACAACAAGGGGAGCCGTCTAAGCCGAAG
CGCAGGCAACGCAAACGGAATACTAACGGAAACGGTGGCTTTCGTGCTTT
GAAGAAGAGAAAGCTGACGGCTGAACAAGCTGAGCTTCTTGAGATGCATT
TTGGCAACGAACACAAGCTTGAATCTGACAGAAAAGACAAGCTCGCTGCT
GAGCTCGGACTCGACCCTCGTCAAGTGGCCGTGTGGTTTCAGAACCGGAG
GGCTCGTGATAAGACTAAGAAGATTGAGGAGACCTACGCTACCTTGAAGA
CCGCTCATGAAAATGTCGTCGTGGAGAAAACCCGACTCGAGTCTGAGGTG
GCAACGCTGAAAGAGAAGCTTTCAGTTGCCGAGAAGGAGATTAAGAAAAT
GTCAGAGCTCATTGAAGGGATTTCACTCAATAATCCGAGTGCCACGATCC
CAACGGACATGGACACCGTGGACTCACCGTTTACCCTGGACCCTTTTGCT
GGTAATCTTGGGTGGTTTGATTATGAGGATCTCCTCTACTTGCTTCAACA
GAATTACATTTCTGCTGCCGAGTGGCTCTTACTCCACACCTATTAATCCA
TCAAGTGATCATCGACGTCGTTGATTTAGGATGTGGGCTTGTAGATAAAT
GACCATCTAATGTATCTAGCTAGGTTTCTAGTGTGTGCTTGGCTGCAC
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