FC872834
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 2.311e-43 Identity = 89/153 (58.17%), Postives = 107/153 (69.93%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPS-VQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460 VTSGHHAAVNFGQY Y GYFPNRPT ++ + SLPS +QA KVMA LD+LS+HSPDEEY+G+ EPAW +P++ AAFEKF G+L E EG ID RN +P+ +NR GAG+VPYELLKPFSEPGVTG+G+P Sbjct: 741 VTSGHHAAVNFGQYHYAGYFPNRPTV--VRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIP 891
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.268e-41 Identity = 89/154 (57.79%), Postives = 106/154 (68.83%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPY 463 VTSGHHAAVNFGQY YGGYFPNRPTT ++ + + + PS QAT VM LD+LSTHSPDEEY+G++ E +W +PVINAAFE+F+GKL LEG+ID RN + L+NR GAG+V YELLKP SE GVTG GVPY Sbjct: 741 VTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVL--LKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPY 892
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 1.040e-35 Identity = 79/154 (51.30%), Postives = 96/154 (62.34%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTAS--MQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460 V + HHAAVNFGQY +GGYFPNRP+ A M + PS VQAT VMA+LDVLSTHS DEEYLG E W D + AA+ F +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P Sbjct: 785 VAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPS--QVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIP 936
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 1.358e-35 Identity = 78/154 (50.65%), Postives = 97/154 (62.99%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTAS--MQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460 V + HHAAVNFGQY +GGYFPNRP+ A M + PS VQAT VMA+LDVLS+HS DEEYLG E W D + AA++ F +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P Sbjct: 768 VAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPS--QVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIP 919
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.113e-29 Identity = 72/155 (46.45%), Postives = 94/155 (60.65%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPS-VQATKVMAILDVLSTHSPDEEYLG--KEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460 + SG HAA+NFGQY +GGY PNRPT + + SLP+ +QATKVMA+ + LSTHSPDEEYL +E++ W +D + F KF +L+++E I+ RN D KL+NR GAGM PYELL P S GVTG+G+P Sbjct: 762 IASGQHAAINFGQYPFGGYVPNRPTLLRK----LIPQETDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIP 912
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.230e-29 Identity = 73/154 (47.40%), Postives = 93/154 (60.39%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460 + S HAA+NFGQY YGGY PNRP M+ +F S+PS+ Q +K MA++D LSTHSPDEEY+G+ +P+ W D I AF F ++ +E I+ RNADP RNR GAG++PYELL P SEPGVT +GVP Sbjct: 765 LASAQHAALNFGQYPYGGYVPNRPPL--MRRLIPDESDPEYASFISHPEKYYF--SSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVP 914
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 5.525e-29 Identity = 73/154 (47.40%), Postives = 91/154 (59.09%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460 + S HAA+NFGQY YGGY PNRP M+ F S+PS+ Q TK MA++D LSTHSPDEEY+G+ +P+ W D I AF F ++ +E ID RN DP RNR GAG++PYEL+ P SEPGVT +GVP Sbjct: 772 LASAQHAALNFGQYPYGGYVPNRPPL--MRRLIPDESDPEFTSFIEDPQKYFF--SSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVP 921
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28 Identity = 68/140 (48.57%), Postives = 82/140 (58.57%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 424 VTSGHHAAVNFGQY GY PNRPT A + PS Q+ V+AILD+LSTHS DEEY+G EPAW +D VIN AFE+F+ ++ +D N DP +NR+GAGMVPY LL+P Sbjct: 772 VTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDMRDFVEAPEKVLLDTFPS--QYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRP 909
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 5.171e-27 Identity = 67/151 (44.37%), Postives = 83/151 (54.97%), Query Frame = 2 Query: 11 SGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460 S HAA+NFGQY GGY PNRP F + +LPS+ Q T M ++D LSTHS DEEYLG+ + AW DP AA +F + E I+ RNADP RNR GAG++PYEL+ P S PG+T +GVP Sbjct: 748 SAQHAALNFGQYPLGGYIPNRPPLMRR----LVPAEGDPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVP 894
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24 Identity = 67/156 (42.95%), Postives = 85/156 (54.49%), Query Frame = 2 Query: 5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPA---WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460 + S HAA+NFGQY GGY PNRP ++ F + ++P V +ATK MA++D LSTHSPDEEYLG+ + W D AA F + E I+ RNAD +NR GAG++PYELL P S PGVT +GVP Sbjct: 760 LASAQHAALNFGQYPLGGYVPNRPPL--IRRLLPDLERDAAEYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVP 913 The following BLAST results are available for this feature:
BLAST of FC872834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872834 ID=FC872834; Name=FC872834; organism=Citrus clementina; type=EST; length=627bpback to top |