FC872834

Overview
NameFC872834
Unique NameFC872834
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2301..2924. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.311e-43
Identity = 89/153 (58.17%), Postives = 107/153 (69.93%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPS-VQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            VTSGHHAAVNFGQY Y GYFPNRPT   ++                        + SLPS +QA KVMA LD+LS+HSPDEEY+G+  EPAW  +P++ AAFEKF G+L E EG ID RN +P+ +NR GAG+VPYELLKPFSEPGVTG+G+P
Sbjct:  741 VTSGHHAAVNFGQYHYAGYFPNRPTV--VRRNIPVEENRDDEMKKFMARPEEVLLQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIP 891          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.268e-41
Identity = 89/154 (57.79%), Postives = 106/154 (68.83%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVPY 463
            VTSGHHAAVNFGQY YGGYFPNRPTT  ++                    +   + + PS  QAT VM  LD+LSTHSPDEEY+G++ E +W  +PVINAAFE+F+GKL  LEG+ID RN +  L+NR GAG+V YELLKP SE GVTG GVPY
Sbjct:  741 VTSGHHAAVNFGQYGYGGYFPNRPTTTRIRMPTEDPTDEALKEFYESPEKVL--LKTYPSQKQATLVMVTLDLLSTHSPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPY 892          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.040e-35
Identity = 79/154 (51.30%), Postives = 96/154 (62.34%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTAS--MQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            V + HHAAVNFGQY +GGYFPNRP+ A   M                     +    PS   VQAT VMA+LDVLSTHS DEEYLG E    W  D  + AA+  F  +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P
Sbjct:  785 VAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPS--QVQATVVMAVLDVLSTHSTDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIP 936          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.358e-35
Identity = 78/154 (50.65%), Postives = 97/154 (62.99%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTAS--MQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            V + HHAAVNFGQY +GGYFPNRP+ A   M                     +    PS   VQAT VMA+LDVLS+HS DEEYLG E    W  D  + AA++ F  +L E+EG+ID RN D KL+NR GAG++PY+L+KPFS+ GVTG G+P
Sbjct:  768 VAAAHHAAVNFGQYDFGGYFPNRPSIARTVMPVEEPVDGAAMERFLDNPDQALRECFPS--QVQATVVMAVLDVLSSHSTDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIP 919          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.113e-29
Identity = 72/155 (46.45%), Postives = 94/155 (60.65%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPS-VQATKVMAILDVLSTHSPDEEYLG--KEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + SG HAA+NFGQY +GGY PNRPT                          +  + SLP+ +QATKVMA+ + LSTHSPDEEYL   +E++  W +D  +   F KF  +L+++E  I+ RN D KL+NR GAGM PYELL P S  GVTG+G+P
Sbjct:  762 IASGQHAAINFGQYPFGGYVPNRPTLLRK----LIPQETDPDYEMFMRNPQYSFLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIP 912          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.230e-29
Identity = 73/154 (47.40%), Postives = 93/154 (60.39%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + S  HAA+NFGQY YGGY PNRP    M+                     +F   S+PS+ Q +K MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  I+ RNADP  RNR GAG++PYELL P SEPGVT +GVP
Sbjct:  765 LASAQHAALNFGQYPYGGYVPNRPPL--MRRLIPDESDPEYASFISHPEKYYF--SSMPSLAQTSKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNADPDRRNRCGAGVLPYELLVPSSEPGVTCRGVP 914          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 5.525e-29
Identity = 73/154 (47.40%), Postives = 91/154 (59.09%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPA-WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + S  HAA+NFGQY YGGY PNRP    M+                      F   S+PS+ Q TK MA++D LSTHSPDEEY+G+  +P+ W  D  I  AF  F  ++  +E  ID RN DP  RNR GAG++PYEL+ P SEPGVT +GVP
Sbjct:  772 LASAQHAALNFGQYPYGGYVPNRPPL--MRRLIPDESDPEFTSFIEDPQKYFF--SSMPSLLQTTKFMAVVDTLSTHSPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVP 921          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 68/140 (48.57%), Postives = 82/140 (58.57%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSVQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKP 424
            VTSGHHAAVNFGQY   GY PNRPT A                       +    PS    Q+  V+AILD+LSTHS DEEY+G   EPAW +D VIN AFE+F+    ++   +D  N DP  +NR+GAGMVPY LL+P
Sbjct:  772 VTSGHHAAVNFGQYPMAGYIPNRPTMARRNMPTEIGGDDMRDFVEAPEKVLLDTFPS--QYQSAIVLAILDLLSTHSSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRP 909          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX5_ORYSJ (Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.171e-27
Identity = 67/151 (44.37%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   11 SGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            S  HAA+NFGQY  GGY PNRP                            F + +LPS+ Q T  M ++D LSTHS DEEYLG+  + AW  DP   AA  +F   +   E  I+ RNADP  RNR GAG++PYEL+ P S PG+T +GVP
Sbjct:  748 SAQHAALNFGQYPLGGYIPNRPPLMRR----LVPAEGDPEYAHLVADPHRFFLSALPSLTQTTTFMTVIDTLSTHSADEEYLGERPDEAWTADPAALAAAREFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSSGPGITCRGVP 894          
BLAST of FC872834 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24
Identity = 67/156 (42.95%), Postives = 85/156 (54.49%), Query Frame = 2
Query:    5 VTSGHHAAVNFGQYIYGGYFPNRPTTASMQHXXXXXXXXXXXXXXXXXXXMHF*IPSLPSV-QATKVMAILDVLSTHSPDEEYLGKEIEPA---WREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 460
            + S  HAA+NFGQY  GGY PNRP    ++                      F + ++P V +ATK MA++D LSTHSPDEEYLG+  +     W  D    AA   F   +   E  I+ RNAD   +NR GAG++PYELL P S PGVT +GVP
Sbjct:  760 LASAQHAALNFGQYPLGGYVPNRPPL--IRRLLPDLERDAAEYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVP 913          
The following BLAST results are available for this feature:
BLAST of FC872834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
LOX23_HORVU2.311e-4358.17Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX2_ARATH1.268e-4157.79Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC2_ORYSJ1.040e-3551.30Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOXC1_ORYSJ1.358e-3550.65Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX6_ARATH1.113e-2946.45Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX3_ARATH4.230e-2947.40Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX4_ARATH5.525e-2947.40Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX21_HORVU4.677e-2848.57Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX5_ORYSJ5.171e-2744.37Putative lipoxygenase 5 OS=Oryza sativa subsp. jap... [more]
LOX6_ORYSJ1.078e-2442.95Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CH11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872834 ID=FC872834; Name=FC872834; organism=Citrus clementina; type=EST; length=627bp
GGGGGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACATTT
ACGGAGGCTATTTCCCCAATAGGCCAACCACTGCAAGTATGCAACATCGC
CACTGAAGAAACCATCTGTTGAACAATGGAAATTCTTCCTTGAAAAACCT
GAAAATGCACTTTTGAATACCTTCCCTTCCCAGTGTTCAAGCTACTAAAG
TTATGGCTATTCTTGATGTTTTATCGACTCATTCTCCTGATGAGGAGTAT
TTAGGAAAAGAAATAGAGCCAGCATGGCGTGAGGACCCGGTTATAAATGC
AGCATTTGAAAAGTTTAGAGGCAAGTTAATGGAGCTTGAAGGGATTATTG
ATGCAAGGAATGCAGATCCCAAGTTGAGGAATAGAAATGGAGCTGGGATG
GTGCCATATGAGCTCTTGAAGCCATTTTCGGAACCTGGTGTTACAGGAAA
AGGAGTTCCGTACAGCATCTCTATCTAGAGTTGAAAATGTTGTTGCAATC
GCTCGAATGTTGTGTCAATAAAAACTTTTGAGAATGAGTTCAAGAATGAA
TCAAATAAATTGCAGTTAATGTTGCTGTCGGTGTTATATTATTAACTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA
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