FC872835

Overview
NameFC872835
Unique NameFC872835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872835_ssr657 microsatellite FC872835_ssr657:657..668. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig462 contig Ccv1_Contig462:19..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872835 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.134e-47
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 3
Query:  150 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSARAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 440
            MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSA APDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of FC872835 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 57/104 (54.81%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  150 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSARAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 437
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSA APDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of FC872835 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.068e-19
Identity = 54/104 (51.92%), Postives = 68/104 (65.38%), Query Frame = 3
Query:  150 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLG---TISRTGIMEKNDLRPAVREDSGA-----SSARAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 437
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSA APDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of FC872835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI6.134e-4798.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI9.862e-2154.81Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI7.068e-1951.92Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3CH12ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB3CH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872835 ID=FC872835; Name=FC872835; organism=Citrus clementina; type=EST; length=740bp
GGGGAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTATAGCTA
CTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGAAACAT
CCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAAAACAA
TGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGAT
GGCATCTCGCTCTCCATTAGCAGGAGAGGATATGCTGCAGCAGCACCCTT
GGGGACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAGGCCTG
CGGTGAGAGAGGATTCTGGGGCCTCTTCTGCCCGGGCCCCAGATCCCATC
ACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGA
GCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGG
TGGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTAA
GTGATGTTGTTACAGTAGCAATTTTGACTCACTCTTAAGTCTTTGCTGTT
GTATTGATATCAACTGTTATTGACAACTTTTAATAGTGCATTTCCATGAT
TTTGTCTATTAACTTGTCAATAAAAGTAAAGAATTCCTGTATTGCAAAAT
TACTTTTATATATATATAGAGGGGTTATGCGGTCTGGGATCCCAGACTGT
AATTAAAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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