FC872950
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 3.591e-54 Identity = 105/148 (70.95%), Postives = 122/148 (82.43%), Query Frame = 3 Query: 81 ERTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKELASSL 524 E++ K +KK ++LAPIAKPLAGKKL K T L++ AA KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+L EE KLK DY V +D+KELA+S+ Sbjct: 8 EKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKELATSV 155
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2) HSP 1 Score: 139.428 bits (350), Expect = 1.734e-32 Identity = 69/143 (48.25%), Postives = 103/143 (72.03%), Query Frame = 3 Query: 84 RTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512 +T YE + + ++ P AKPLA KKL+K L V+ A++ K +KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+ +PYI++ SK+DL AGATKRPT V ++ K + G+ ++++ K + VV++V+ L Sbjct: 15 KTVDNYEAR-MPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_SCHPO (H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces pombe GN=nhp2 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29 Identity = 62/131 (47.33%), Postives = 95/131 (72.52%), Query Frame = 3 Query: 120 SLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512 +L PIAKPLA KKL+K + V+ A++ K + RGVKEVVK++R+G KGL ++AG+ISP+DVI+H+P+LCE++++PY+Y SKE L A TKRPT CV+++ K ++ + E+ K Y ++++V L Sbjct: 24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25 Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = 3 Query: 42 ITEQIKWEATA*PERTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 419 +T+ K E+ PE TP K + + L PIAKPLAG+KL+K V+ A + K ++RGVKEV K I +G KG+ V+AG+ PI+V H+P++CE+ IPY YV SK DL A +KRPTC +L+ Sbjct: 1 MTKAKKEESEEVPE-TPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.019e-24 Identity = 59/126 (46.83%), Postives = 82/126 (65.08%), Query Frame = 3 Query: 42 ITEQIKWEATA*PERTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 419 +T+ K E PE TP K + + L P+AKPLAG+KL+K V+ A + K ++RGVKEV K I +G KG+ V+AG+ PI+V H+P++CE+ IPY YV SK DL A +KRPTC +L+ Sbjct: 1 MTKVKKEECEEVPE-TPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23 Identity = 54/121 (44.63%), Postives = 83/121 (68.60%), Query Frame = 3 Query: 105 KKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDK 467 K+ +V+L PIA+PLA ++L++ ++ A + K ++RGVKEV K + +G KG+ V+AG+ PI+V H+P+LCE+ ++PY+Y+ SK DL A +KRPTC ++V KP E QE DK Sbjct: 25 KELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV--KP--HEEYQETYDK 141
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_BOVIN (H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23 Identity = 50/113 (44.25%), Postives = 79/113 (69.91%), Query Frame = 3 Query: 81 ERTPHKYEKKNIVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 419 ERT H+ +V+L PIA+PLA ++L++ ++ A + K ++RGVKEV K I +G KG+ V+AG+ PI+V H+P++CE+ ++PY+Y+ SK DL A +KRPTC ++V Sbjct: 21 ERTYHEL----LVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFINKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMV 129
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.279e-23 Identity = 59/133 (44.36%), Postives = 81/133 (60.90%), Query Frame = 3 Query: 114 IVSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 512 I ++ PIA PLA +KLSK V+ AA+ K ++RGVKEV K I +G G+ V AG+ PIDV H+PI+CE+ +PY YV SK DL ++ +KRPTC +++ KP D+ K Y VE+V L Sbjct: 25 IANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP---------HDEYKEAYDECVEEVTSL 146
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23 Identity = 52/119 (43.70%), Postives = 81/119 (68.07%), Query Frame = 3 Query: 129 PIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYT 485 PIA PLA +KL+K V+ A++ K +++G+++V K I++G +G+ +IAG+ +PI+V H+P++CE++ IPY YV +K+DL A +KRPTCCVL+ KP E Q D+ D T Sbjct: 39 PIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KP--NESYQSSYDECLTDVT 153
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: NHP2_CAEBR (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22 Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 3 Query: 87 TPHKYEKKNIVSLA-PIAKPLAGKKLSKGTLGLVRLAAE-HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 434 T K E + + L PIA+PLA +KL+K L++ AA K L+ G+K+V K +R+ KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L A +RP+ +L+ KP+ Sbjct: 26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141 The following BLAST results are available for this feature:
BLAST of FC872950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872950 ID=FC872950; Name=FC872950; organism=Citrus clementina; type=EST; length=700bpback to top |