FC872959

Overview
NameFC872959
Unique NameFC872959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872959_ssr22 microsatellite FC872959_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig632 contig Ccv1_Contig632:28..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS202_ARATH (40S ribosomal protein S20-2 OS=Arabidopsis thaliana GN=RPS20B PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.651e-58
Identity = 114/122 (93.44%), Postives = 115/122 (94.26%), Query Frame = 3
Query:   93 MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct:    1 MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 122          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS201_ARATH (40S ribosomal protein S20-1 OS=Arabidopsis thaliana GN=RPS20A PE=1 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 8.192e-58
Identity = 113/121 (93.39%), Postives = 114/121 (94.21%), Query Frame = 3
Query:   96 AYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            AY  MKP K GLEE  EQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS
Sbjct:    4 AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 124          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_ORYSJ (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica GN=RPS20 PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 8.211e-50
Identity = 101/122 (82.79%), Postives = 109/122 (89.34%), Query Frame = 3
Query:   93 MAYAA-MKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455
            +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRMPTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SS DVVKQITSITIEPGVEVEVTI+D
Sbjct:    6 VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_RAT (40S ribosomal protein S20 OS=Rattus norvegicus GN=Rps20 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.694e-42
Identity = 82/118 (69.49%), Postives = 100/118 (84.75%), Query Frame = 3
Query:  105 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_MOUSE (40S ribosomal protein S20 OS=Mus musculus GN=Rps20 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.694e-42
Identity = 82/118 (69.49%), Postives = 100/118 (84.75%), Query Frame = 3
Query:  105 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_MACFA (40S ribosomal protein S20 OS=Macaca fascicularis GN=RPS20 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.694e-42
Identity = 82/118 (69.49%), Postives = 100/118 (84.75%), Query Frame = 3
Query:  105 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_HUMAN (40S ribosomal protein S20 OS=Homo sapiens GN=RPS20 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.694e-42
Identity = 82/118 (69.49%), Postives = 100/118 (84.75%), Query Frame = 3
Query:  105 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_BOVIN (40S ribosomal protein S20 OS=Bos taurus GN=RPS20 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.694e-42
Identity = 82/118 (69.49%), Postives = 100/118 (84.75%), Query Frame = 3
Query:  105 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_XENLA (40S ribosomal protein S20 OS=Xenopus laevis GN=rps20 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.834e-41
Identity = 78/103 (75.73%), Postives = 95/103 (92.23%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:   17 IHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_PONAB (40S ribosomal protein S20 OS=Pongo abelii GN=RPS20 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.395e-41
Identity = 81/118 (68.64%), Postives = 99/118 (83.90%), Query Frame = 3
Query:  105 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITT K+PCGEG+ TWDRF++R+HKR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTGKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119          
The following BLAST results are available for this feature:
BLAST of FC872959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS202_ARATH1.651e-5893.4440S ribosomal protein S20-2 OS=Arabidopsis thalian... [more]
RS201_ARATH8.192e-5893.3940S ribosomal protein S20-1 OS=Arabidopsis thalian... [more]
RS20_ORYSJ8.211e-5082.7940S ribosomal protein S20 OS=Oryza sativa subsp. j... [more]
RS20_RAT3.694e-4269.4940S ribosomal protein S20 OS=Rattus norvegicus GN=... [more]
RS20_MOUSE3.694e-4269.4940S ribosomal protein S20 OS=Mus musculus GN=Rps20... [more]
RS20_MACFA3.694e-4269.4940S ribosomal protein S20 OS=Macaca fascicularis G... [more]
RS20_HUMAN3.694e-4269.4940S ribosomal protein S20 OS=Homo sapiens GN=RPS20... [more]
RS20_BOVIN3.694e-4269.4940S ribosomal protein S20 OS=Bos taurus GN=RPS20 P... [more]
RS20_XENLA1.834e-4175.7340S ribosomal protein S20 OS=Xenopus laevis GN=rps... [more]
RS20_PONAB2.395e-4168.6440S ribosomal protein S20 OS=Pongo abelii GN=RPS20... [more]

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Libraries
Library NameType
AbsDevcdna_library
Properties
Property NameValue
Genbank descriptionKN0AAI3DG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872959 ID=FC872959|Name=FC872959|organism=Citrus clementina|type=EST|length=765bp
AAGAGGCAGCACATGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTC
TCTCGAAATCCTATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTA
TGCAGCAATGAAGCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGA
TTCATAAGATCAGAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAG
AAAGTCTGTACGGATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGT
CAAGGGTCCAGTGAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGA
AGTCCCCTTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGT
GTTCACAAGAGAGTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCA
GATCACTTCCATTACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTG
CCGACTCTTAAATGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAG
TGAAATCAGAAGTAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTT
GTCAAGAATTTAAGACTGAACAATCGATGTAGGGTTGATGTTAGTTTGTT
TTTTGCCATACTATTTTGCAAGTTAAAAATTATGTTTTGGGTTATGTGGA
GAGGGATTTTGTTTACTGTTCATTTTATATTAAGCAATGTTTGGATATTT
GTTTTGAATCTCTAATAGACGTTAAATATCATATGTTTTCCCCCAAAAAA
AAAAAAAAAAAAAAA
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