FC872973

Overview
NameFC872973
Unique NameFC872973
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: LINS_ARATH (Linalool synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS14 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.443e-72
Identity = 129/219 (58.90%), Postives = 163/219 (74.43%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLPRLEEYVKSLL 659
            WD  G++ LP+ M++CF+AL+ IT EIS K+YK HG+NP ++LR++W SLC AFL EAKWF SG++P  EEY+KNG+VSS                +T E V LI+SNP IVSS ATILRLWDDLGSAKDENQDG DGSY+  Y+ E++  T ++A+ H   KIS AWKRLN+ECL+P PFS SF++A LN AR VPLMY YDD+QRLP  +EY+KSL+
Sbjct:  353 WDHKGLKTLPKYMRVCFEALDMITTEISMKIYKSHGWNPTYALRQSWASLCKAFLVEAKWFNSGYLPTTEEYMKNGVVSSGVHLVMLHAYILLGEELTKEKVELIESNPGIVSSAATILRLWDDLGSAKDENQDGTDGSYVECYLNEYKGSTVDEARTHVAQKISRAWKRLNRECLNPCPFSRSFSKACLNIARTVPLMYSYDDDQRLP--DEYLKSLM 569          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPS02_ARATH (Probable terpenoid synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS02 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.466e-30
Identity = 73/229 (31.88%), Postives = 123/229 (53.71%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFS--ASFTRASLNTARMVPLMYGYDDNQRLP---RLEEYVKSLLFDNLP 674
            WD+  +E+LP  M++CF  L +  N+I   V ++ G N +  L++ W  L   FLTE+KW+ +GH P  EEY++NG++SS                I+ +T+     N  +V S ATILRL +DL ++ +E   G+    +  YM E +  + E+A++H    ISD+W  +N +  + +  S    F  A+ N  R+V  +Y + D    P   +  +Y++S+LF+ +P
Sbjct:  372 WDVNHVERLPNYMRMCFLFLYNEINQIGYDVLRDKGLNVIPYLKQVWTDLFKTFLTESKWYKTGHKPSFEEYMQNGVISSSVPTILLHLFSVLSDHISDQTLTDDSKNHSVVRSCATILRLANDLATSTEEMARGDSPKSVQCYMYETR-ASEEEARRHMQSMISDSWDIINSDLKTAHTSSLPRGFLAAAANLNRVVQCIYRHGDGHGSPEKTKTVDYIQSVLFNPVP 599          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.466e-30
Identity = 74/226 (32.74%), Postives = 120/226 (53.10%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLPRLE--EYVKSLLFDNLP 674
            WD+  ++QLP+ MKICF  L++  NE++    KE  ++ +  L+KAW  LC  +L EAKW+++ + P  +EY++N  +S                 IT E +  ++  P I+   + I RL DDLG++ DE + G+    I  YM E    + E A+++    IS  WK++N++  + +PFS  F   +LN ARM   +Y + D   L   E  + + SLL   +P
Sbjct:  369 WDINAMDQLPDYMKICFLTLHNSVNEMALDTMKEQRFHIIKYLKKAWVDLCRYYLVEAKWYSNKYRPSLQEYIENAWISIGAPTILVHAYFFVTNPITKEALDCLEEYPNIIRWSSIIARLADDLGTSTDELKRGDVPKAIQCYMNE-TGASEEGAREYIKYLISATWKKMNKDRAASSPFSHIFIEIALNLARMAQCLYQHGDGHGLGNRETKDRILSLLIQPIP 593          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.088e-29
Identity = 73/224 (32.59%), Postives = 118/224 (52.68%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDN---QRLPRLEEYVKSLLFD 665
            WD+  ++QLP  M+IC+ AL +  NE++    ++ G+N    LRKAW  L  ++L EAKW+  GH P  EEY+KN  +S                 I  E    +     IV +  TILRL DD+G++ DE + G+    +  YM E ++ + E+A++H    I   WK +N+E ++ + FS  F + S N ARM   +Y ++ +    +   + + ++ LLFD
Sbjct:  367 WDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFNSTPYLRKAWVDLVESYLIEAKWYYMGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEDAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNE-KNASEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVQVSANLARMAQWIYQHESDGFGMQHSLVNKMLRGLLFD 588          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.954e-27
Identity = 77/230 (33.48%), Postives = 117/230 (50.87%), Query Frame = 3
Query:    3 WDLG-GIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECL-SPNPFSASFTRASLNTARMVPLMYGYDDNQRLPRLE--EYVKSLLFDNLPTQ 680
            WD+   ++ LP  MK+CF AL +  NE +  V K+  ++ + S++ AW  L  A+L EAKW+ S + PK EEYL+NG+VS                 I  + +  ++SNP IV   + I RL DDLG++ DE Q G+    I  YM E    + E A++H  D +   WK++N       +P + + T   LN  RM   MY + D   +   E  +   +LLF  +P +
Sbjct:  364 WDINYALKHLPGYMKMCFLALYNFVNEFAYYVLKQQDFDLLLSIKNAWLGLIQAYLVEAKWYHSKYTPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHE-TGASEEVARQHIKDMMRQMWKKVNAYTADKDSPLTGTTTEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLE 592          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.072e-25
Identity = 71/232 (30.60%), Postives = 113/232 (48.71%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVR-LIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQE----CLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLP---RLEEYVKSLLFDNLP 674
            WD+  +++LPE MK+CF  L +  N +   V K    + +   +K+W  LC A+L EAKW+  G+ P  EEY++N  +S                 I+ + +  L+     +V   AT+LRL +DL ++ DE   G+    +  YM E   V+ E+A+ H    IS  W  +N E      S +  S  F   ++N ARM   MY + D    P   ++ + V++LL D +P
Sbjct:  366 WDINRLDELPEYMKLCFLTLFNEINAMGCDVLKCKNIDVIPYFKKSWADLCKAYLVEAKWYKGGYKPSVEEYMQNAWISISAPTMLIHFYCAFSGQISVQILESLVQQQQDVVRCSATVLRLANDLATSPDELARGDVLKSVQCYMHE-TGVSEEEARTHVQQMISHTWDEMNYEARTAARSSSLLSRRFVETAMNLARMSQCMYQHGDGHGCPDKAKIVDRVQTLLVDPIP 596          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.074e-25
Identity = 74/228 (32.46%), Postives = 116/228 (50.88%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDS-NPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLP---RLEEYVKSLLFDNLP 674
            WD+  +E+LP  MK+CF  L +  N+I   V ++ G+N +  L+++W  +C  FL EAKW+ SG+ P  EEY++NG +SS                ++ +T+ ++ S N  +V S ATILRL +DL ++ +E   G+    +  +M E     AE ++ +    I  AW  LN E  S       F  A+ N  R+   +Y Y D    P   +   +V+SLL   LP
Sbjct:  342 WDVNRLEELPNYMKLCFLCLVNEINQIGYFVLRDKGFNVIPYLKESWADMCTTFLKEAKWYKSGYKPNFEEYMQNGWISS----SVPTILLHLFCLLSDQTLDILGSYNHSVVRSSATILRLANDLATSSEELARGDTMKSVQCHMHETGASEAE-SRAYIQGIIGVAWDDLNMEKKSCR-LHQGFLEAAANLGRVAQCVYQYGDGHGCPDKAKTVNHVRSLLVHPLP 563          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.321e-25
Identity = 73/207 (35.27%), Postives = 105/207 (50.72%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVR-LIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAED-AQKHATDKISDAWKRLNQECLSPNP-FSASFTRASLNTARMVPLMYGYDD 614
            WDL  +++LP+ MK  F    + TNE++  V +EHG+  +   +K    LC   L EAKWF SG+ P  +EY++NG +S                 +T E +  L D +P IV   + ILRL DDLG+  DE + G+    I  YM  H    +ED A++H    IS++WK +N E  + N  FS  F +   N  R    +Y Y D
Sbjct:  395 WDLKELDKLPDYMKTAFYFTYNFTNELAFDVLQEHGFVHIEYFKKLMVELCKHHLQEAKWFYSGYKPTLQEYVENGWLSVGGQVILMHAYFAFTNPVTKEALECLKDGHPNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYM--HDTGASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGD 599          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.641e-24
Identity = 72/231 (31.17%), Postives = 111/231 (48.05%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVRLIDSN-PPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAEDAQKHATDKISDAWKRLNQE---CLSPNPFSASFTRASLNTARMVPLMYGYDDNQRLP---RLEEYVKSLLFDNLP 674
            WD+  + +LPE M++CF  L +  N I   + K    + +  L+K+W  LC  +L EAKW+  G+ P  EEY++N  +S                 I+ + +  +  +   IV   AT+LRL +DLG++  E   G+    +  YM E    + E A+ H    ISD W  +N E     + +  S  F  A++N ARM   MY Y D    P   +  + V+SLL D +P
Sbjct:  364 WDVNRLGELPEYMRLCFLILYNEINGIGCDILKYKKIDVIPYLKKSWADLCRTYLVEAKWYKRGYKPSLEEYMQNAWISISAPTILIHFYCVFSDQISVQNLETLSQHRQHIVRCSATVLRLANDLGTSPTELARGDVLKSVQCYMHE-TGASEERARDHVHQMISDMWDDMNSETKTACNSSSRSRGFKEAAMNLARMSQCMYQYGDGHGCPEKAKTIDRVQSLLVDPIP 593          
BLAST of FC872973 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.684e-24
Identity = 69/206 (33.50%), Postives = 103/206 (50.00%), Query Frame = 3
Query:    3 WDLGGIEQLPECMKICFKALNDITNEISNKVYKEHGYNPVHSLRKAWGSLCNAFLTEAKWFASGHMPKAEEYLKNGIVSSXXXXXXXXXXXXXXXXITSETVR-LIDSNPPIVSSVATILRLWDDLGSAKDENQDGNDGSYIYYYMMEHQDVTAED-AQKHATDKISDAWKRLNQECLSPNPFSASFTRASLNTARMVPLMYGYDD 614
            WD   I +LP+ MK+ F  L +  NE++  V +EH +  V  L+ +W  LC  +L EAKWF SG+ P  ++Y++N  +S                 IT+E +  L + +       + +LRL DDLG+  DE + G+    I  YM  H    +ED A++H    IS+ WK +N E    + FS  F +A  N  RM   MY + D
Sbjct:  389 WDAKTIHELPDYMKLPFFTLFNTVNEMAYDVLEEHNFVTVEYLKNSWAELCRCYLEEAKWFYSGYKPTLKKYIENASLSIGGQIIFVYAFFSLTKSITNEALESLQEGHHAACRQGSLMLRLADDLGTLSDEMKRGDVPKSIQCYM--HDTGASEDEAREHIKFLISEIWKEMNDEDEYNSIFSKEFVQACKNLGRMSLFMYQHGD 592          
The following BLAST results are available for this feature:
BLAST of FC872973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
LINS_ARATH4.443e-7258.90Linalool synthase, chloroplastic OS=Arabidopsis th... [more]
TPS02_ARATH2.466e-3031.88Probable terpenoid synthase 2, chloroplastic OS=Ar... [more]
MYRS_QUEIL2.466e-3032.74Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
SCS_SALOF2.088e-2932.591,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
RLC1_CITLI1.954e-2733.48(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS2_ARATH1.072e-2530.60Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
OCIS_ARATH4.074e-2532.46(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
TPS1_CANSA5.321e-2535.27(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
CINS_ARATH2.641e-2431.171,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
TPS2_CANSA7.684e-2433.50(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872973 ID=FC872973; Name=FC872973; organism=Citrus clementina; type=EST; length=763bp
GATGGGATCTTGGGGGCATTGAACAACTGCCGGAGTGCATGAAGATATGC
TTCAAGGCTCTGAACGATATCACTAATGAAATCAGCAACAAGGTGTATAA
GGAGCATGGGTATAACCCTGTCCACTCCCTGCGAAAGGCGTGGGGAAGTT
TGTGCAACGCGTTTCTGACAGAAGCGAAATGGTTTGCTTCCGGGCACATG
CCTAAGGCTGAAGAGTACTTGAAAAATGGGATTGTTAGCTCAGGGGTACA
CCTGGGACTTGTGCACGTTTTCTTTCTCCTGGGTCATGGCATCACCAGTG
AAACTGTGCGACTCATTGACAGCAACCCGCCCATAGTATCGTCCGTCGCA
ACAATTCTTCGACTTTGGGACGACTTAGGAAGTGCTAAGGATGAAAATCA
AGATGGCAACGATGGATCTTACATATATTACTACATGATGGAGCACCAAG
ACGTAACAGCTGAAGATGCACAAAAGCATGCTACGGATAAGATTTCAGAT
GCATGGAAGCGCCTAAACCAGGAATGCCTCTCCCCAAATCCATTTTCAGC
ATCTTTCACAAGGGCTTCTCTTAACACTGCCAGAATGGTTCCTTTGATGT
ATGGCTATGATGACAATCAGAGGCTTCCGAGACTCGAGGAGTATGTTAAG
TCCCTCCTCTTCGATAATTTGCCTACTCAAGGAGTGTACTAGTTAGTGAT
AAAGCTCCATACCTACGTACGTATACTATGGAAGTTTCTTTAAAAAAAAA
AAAAAAAAAAAAA
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