FC872977

Overview
NameFC872977
Unique NameFC872977
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1158 contig Ccv1_Contig1158:2..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872977 vs. ExPASy Swiss-Prot
Match: SQD1_SPIOL (UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.321e-82
Identity = 148/180 (82.22%), Postives = 161/180 (89.44%), Query Frame = 3 
Query:    3 VRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXXNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 542
            V T+ETAMHEELCNR DYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA+ GEFRVFNQFTEQ+SV  LAALVTKAGEKLGL+V+TISVPNPRVEAEEHYYNAKHTKL ELGL+PH+          NFA+Q+KDRVD+KQIMPSVSW+KIG KP+T+ A
Sbjct:  303 VMTEETAMHEELCNRFDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAKLGEFRVFNQFTEQYSVRDLAALVTKAGEKLGLNVETISVPNPRVEAEEHYYNAKHTKLAELGLKPHLLSDSLLDSVLNFAVQYKDRVDTKQIMPSVSWKKIGVKPQTLRA 482
[Close]
BLAST of FC872977 vs. ExPASy Swiss-Prot
Match: SQD1_ARATH (UDP-sulfoquinovose synthase, chloroplastic OS=Arabidopsis thaliana GN=SQD1 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.551e-81
Identity = 145/178 (81.46%), Postives = 159/178 (89.33%), Query Frame = 3 
Query:    3 VRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIXXXXXXXXXXNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 536
            V+TDET MHEEL NRLDYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE+AIANPA+ GEFRVFNQFTEQFSVN+LA+LVTKAG KLGLDVK ++VPNPRVEAEEHYYNAKHTKL+ELGL+PH           NFA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct:  298 VKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 475
The following BLAST results are available for this feature:
BLAST of FC872977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SQD1_SPIOL1.321e-8282.22UDP-sulfoquinovose synthase, chloroplastic OS=Spin... [more]
SQD1_ARATH5.551e-8181.46UDP-sulfoquinovose synthase, chloroplastic OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BA11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872977 ID=FC872977; Name=FC872977; organism=Citrus clementina; type=EST; length=791bp
GAGTGAGAACAGATGAGACTGCCATGCATGAAGAACTCTGTAACAGGTTA
GATTATGATGGGGTGTTTGGGACTGCATTGAATCGGTTTTGTGTTCAAGC
TGCTGTCGGTCATCCGCTTACAGTGTATGGAAAAGGAGGCCAGACTAGAG
GTTACCTTGACATAAGAGATACAGTTCAGTGTGTTGAACTTGCAATTGCA
AACCCAGCACAGCCCGGTGAATTTCGGGTCTTTAATCAATTCACGGAGCA
GTTTTCTGTCAATCAACTTGCTGCCCTAGTTACAAAAGCAGGAGAGAAGC
TTGGGCTTGACGTAAAAACCATATCTGTTCCCAACCCACGAGTAGAAGCA
GAGGAGCATTATTACAATGCAAAGCACACAAAACTCATTGAGCTGGGACT
CCAACCACACATTCTTTCGGACTCACTTCTTGACTCGTTGCTCAACTTTG
CCATTCAGTTCAAGGATCGTGTTGACTCAAAACAGATTATGCCCAGTGTT
TCTTGGAGAAAAATTGGAACCAAGCCAAAGACTGTTGCGGCCTAATCAAA
TAAACATGGTTGAGAGATTTTGGAATGATAATGAGTGTTTTAATCTCATC
GTCGTCTCTATTGAGTTCTTCTCTTGCTAGGCACCAGAGCACTTTTCAGA
ACTACACCCATAGAGAGGAGTTGTAATCTAGGGGTTTATGGGCATATGCA
ATTCCCTGCCCCTATAGCATCTGTCTTATGGTCAAGGTCGAATAGCTGTA
TCAAATCCCAGTCTCCGAACTTGTAAGATTTTGAGATTTAT
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