FC872980

Overview
NameFC872980
Unique NameFC872980
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length860
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14945 contig Ccv1_Contig14945:219..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: MRH1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase MRH1 OS=Arabidopsis thaliana GN=MRH1 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.497e-77
Identity = 133/273 (48.72%), Postives = 193/273 (70.70%), Query Frame = 3
Query:    3 NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAM---AEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTE 812
            +GVEI          K+W + +E+ +R+KIDTLS++NHKNFVNLIG+CEE++PF RMMVFEYAPNGTLFEH+H KE+EHLDW  R+RI MG AYCL+HMH +NPP+AH   NSS ++LT+DYAAK+S++ F  E  +     +                 NV++FGVL+ E+++G+L +  + GS+E WA+ YL     L + +DP+L +F EE+LE + ++I+ C++ +  +RP+M+D+A  L+++  ITP+ A P+ SPLWWAE+EILS+E
Sbjct:  405 SGVEIAVASTAIAESKEWTRAMEMAYRRKIDTLSRINHKNFVNLIGYCEEDDPFNRMMVFEYAPNGTLFEHLHDKETEHLDWSARMRIIMGTAYCLQHMHGMNPPMAHTDFNSSEIYLTDDYAAKVSEIPFNLEARLNPKKHVSGDLEQTSLLLPPEPEANVHSFGVLMLEIISGKLSFSDEYGSIEQWASKYLE-KDDLGEMIDPSLKTFKEEELEVICDVIRECLKTEQRQRPSMKDVAEQLKQVINITPEKATPRSSPLWWAELEILSSE 676          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: Y5458_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45840 OS=Arabidopsis thaliana GN=At5g45840 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 2.857e-73
Identity = 129/273 (47.25%), Postives = 186/273 (68.13%), Query Frame = 3
Query:    3 NGVEIXXXXXXXXXXKDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA---MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEILSTE 812
            +GVEI          ++W + +E+ +R++IDT+S+VNHKNF+NLIG+CEE+EPF RMMVFEYAPNGTLFEH+H KE EHLDW  R RI MG AYCL++MH+LNPPI+H  L SSA++LT+DYAAK+ ++ F  +        M                 NVY+FGVL+ E+++G+L    + GS+  WA+ YL     L+  +DPTL+++ EE+LE + ++ + C++ D  +RP M+ +   L+E+  I+ + A P+LSPLWWAE+EILS+E
Sbjct:  422 SGVEIAVASTAILETREWTRAMEMTYRRRIDTMSRVNHKNFINLIGYCEEDEPFNRMMVFEYAPNGTLFEHLHDKEMEHLDWNARTRIIMGTAYCLQYMHELNPPISHTKLVSSAIYLTDDYAAKVGEVPFSGQTGSKPRKPMSGDLDQSLLPLPPEPETNVYSFGVLMLEIISGKLSDSEEEGSILKWASKYLEN-DNLRDMIDPTLTTYKEEELEAICDVARHCLKLDESQRPKMKYVVQQLKEVINISQEQATPRLSPLWWAELEILSSE 693          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: Y1634_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.359e-43
Identity = 90/269 (33.46%), Postives = 150/269 (55.76%), Query Frame = 3
Query:   48 KDWPKNLEVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFW-----------NEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADP------EKRPTMRDIAAILREITGITPDGAIPKLSPLWWAEIEI 800
            +DW   LE+ F++++  L+++NH+N   L+G+C+E  PFTRM+VFEYA NGTL+EH+H  E+  + W  R++I +G+A  L+++H +L+PP   + L+S+A++LTED+  KL D   W             I+                     N+Y FG+LL E+V+GR PY  D G L +WA ++L   + +   VDP L  F++E LE + E+   C+  DP        +P+++++   L     ++    + + S L WAE+ +
Sbjct:  395 EDWTGYLELYFQREVADLARLNHENTAKLLGYCKEISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKIVIGIARGLKYLHMELDPPFTISELSSNAIYLTEDFTPKLVDFECWKTILARSEKNLRNISSQGSICVLPNGMESRYLDVSGNIYAFGILLLEIVSGRPPYCKDKGFLIEWAKEFLEAPEAMSGLVDPELKHFNQEDLETVCEVASQCLNRDPTNNNNNHNKPSVQELCETLESRISLSISAEL-RSSSLAWAELAL 662          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.422e-26
Identity = 78/254 (30.71%), Postives = 126/254 (49.61%), Query Frame = 3
Query:   69 EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMH-QLNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----------------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLEDWAADYLSGVQPLQQFVDPTLSSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAIPKLSPL 779
            E +F  +I+ LS+++H+N V+L+GFC+EE    +M+V+EY  NGTL ++I +K  E LD+ MRLRIA+G A  + ++H + NPPI H  + +S + L   + AK++D        + +M                                 +VY+ GV+L E+ TG  P       + +    Y SG   +   VD  +SS  +E LEK   L   C R + + RP+M ++   L  I  + P+  + K + L
Sbjct:  663 EKEFLTEIELLSRLHHRNLVSLLGFCDEEGE--QMLVYEYMENGTLRDNISVKLKEPLDFAMRLRIALGSAKGILYLHTEANPPIFHRDIKASNILLDSRFTAKVADFGLSRLAPVPDMEGISPQHVSTVVKGTPGYLDPEYFLTHQLTDKSDVYSLGVVLLELFTGMQPITHGKNIVREINIAYESG--SILSTVDKRMSSVPDECLEKFATLALRCCREETDARPSMAEVVRELEIIWELMPESHVAKTADL 912          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.878e-24
Identity = 67/234 (28.63%), Postives = 117/234 (50.00%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWN----EIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNG------SLEDWAADYLSGVQPLQQFVDPTLSS-FDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +F   + ++S ++HKN   L+G+C E+     M+V+EY  +G+L   +H+ +  S+ L W  R+RIA+G A  +E++H+  +PP+ H  + SS + L  +   +LSD    N          +                 +VY+FGV++ E++TGR PY  D+G      SL  WA   L  +  L + VDP L   +  E +    +++  CV  +P  RP + ++   L+ +
Sbjct:  457 EFSHIVSSISSIHHKNMAELVGYCSEQG--RNMLVYEYFTSGSLHRFLHLSDDFSKPLTWNTRIRIALGTAKAIEYLHETCSPPLVHKNIKSSNILLDNELNPRLSDYGLANFHHRTSQNLGVGYNAPECTDPSAYTQKSDVYSFGVVMLELLTGRKPY--DSGRPKAEQSLVRWAKPQLKDMDTLDEMVDPALCGLYAPESVSSFADIVSICVMTEPGLRPPVSNVVEALKRL 686          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: SRF5_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsis thaliana GN=SRF5 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.319e-24
Identity = 67/222 (30.18%), Postives = 110/222 (49.55%), Query Frame = 3
Query:   96 TLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVD----NGSLEDWAADYLSGVQPLQQFVDPTLSS-FDEEQLEKLGELIKSCVRADPEKRPTMRDIAAIL 725
            +LSK+ H+N   L+G+C E+     M+V+EY  NG+L E +H+ +  S+ L W  R+RIA+G A  +E++H+  +P + H  + SS + L  D   +LSD                                 +VY+FGV++ E++TGR+P+  +      SL  WA   L  +  L    DP L   +  + L +  ++I  CV+ +PE RP M ++   L
Sbjct:  453 SLSKIRHQNIAELVGYCSEQGH--NMLVYEYFRNGSLHEFLHLSDCFSKPLTWNTRVRIALGTARAVEYLHEACSPSVMHKNIKSSNILLDADLNPRLSDYGLSKFYLRTSQNLGEGYNAPEARDPSAYTPKSDVYSFGVVMLELLTGRVPFDGEKPRPERSLVRWATPQLHDIDALSNIADPALHGLYPPKSLSRFADIIALCVQVEPEFRPPMSEVVEAL 672          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: SRF3_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsis thaliana GN=SRF3 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.217e-23
Identity = 67/238 (28.15%), Postives = 118/238 (49.58%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAEM----------XXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLED----WAADYLSGVQPLQQFVDPTLS-SFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            +F + ++ +  + H N V L+G+C E +   R++V+EY  NGTL + +H  +   + L W  R+ +A+G A  LE++H++  PPI H    S+ V L +D +  +SD      I+   +                           +VY+FGV++ E++TGR+ Y  D    E     WA   L  +  L + VDP+L+  +  + L    ++I  CV+++PE RP M ++   L ++
Sbjct:  527 EFIELVNNIDMIRHSNIVELVGYCAEHD--QRLLVYEYCSNGTLQDGLHSDDEFKKKLSWNTRVSMALGAARALEYLHEVCEPPIIHRNFKSANVLLDDDLSVLVSDCGLAPLISSGSVSQLSGQLLAAYGYGAPEFDSGIYTWQSDVYSFGVVMLELLTGRMSYDRDRSRGEQFLVRWAIPQLHDIDALGKMVDPSLNGQYPAKSLSHFADIISRCVQSEPEFRPLMSEVVQDLLDM 762          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: Y5977_ARATH (Probable leucine-rich repeat receptor-like protein kinase At5g49770 OS=Arabidopsis thaliana GN=At5g49770 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.711e-23
Identity = 75/247 (30.36%), Postives = 124/247 (50.20%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIAMAE-----------MXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSL----EDWAADYLSGVQPLQQFVDPTL--SSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI---TGITPD 752
            +F+ +I+ LS+V+HKN V L+GFC +++   +M+V+EY PNG+L + +  K    LDW  RL+IA+G    L ++H+L +PPI H  + S+ + L E   AK++D      +   E           M                 +VY FGV++ E++TG+ P  +D GS          D    +  LQ+ +D T+  +S + +  EK  ++   CV  +   RPTM ++   L  I    G+ P+
Sbjct:  674 EFKTEIELLSRVHHKNVVKLLGFCFDQKE--QMLVYEYIPNGSLRDGLSGKNGVKLDWTRRLKIALGSGKGLAYLHELADPPIIHRDVKSNNILLDEHLTAKVADFGLSKLVGDPEKAHVTTQVKGTMGYLDPEYYMTNQLTEKSDVYGFGVVMLELLTGKSP--IDRGSYVVKEVKKKMDKSRNLYDLQELLDTTIIQNSGNLKGFEKYVDVALQCVEPEGVNRPTMSEVVQELESILRLVGLNPN 916          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.040e-23
Identity = 69/240 (28.75%), Postives = 117/240 (48.75%), Query Frame = 3
Query:   69 EVQFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKE--SEHLDWGMRLRIAMGMAYCLEHMHQL-NPPIAHNYLNSSAVHLTEDYAAKLSDLSFWNEIA----------MAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPY--LVDNGS--LEDWAADYLSGVQPLQQFVDPTL-SSFDEEQLEKLGELIKSCVRADPEKRPTMRDIAAILREI 734
            E +F + ++ + ++ H N V L+GFC E     R+++ EY  NGTL + +HI +     L W +R+RIA+  A  LE++H++ +PP  H    S+ + L +D    +SD      I+          +                    +VY+FGV++ E++TGR  Y    D G   L  WA   L  +  L + VDP+L   +  + L    ++I  CV+++PE RP M ++   L ++
Sbjct:  518 EGKFLELVNNIDRIRHANIVQLVGFCSEHSQ--RLLIHEYCRNGTLHDLLHIDDRLKIELSWNVRVRIALEAAKALEYLHEICDPPSIHRNFKSANILLDDDIRVHVSDCGLAPLISSGAVSQLSGQLLAAYGYGAPEFEYGIYTMKCDVYSFGVVMLELLTGRKSYDKKRDRGEQFLVRWAIPQLHDIDALAKMVDPSLKGDYPAKSLSHFADVISRCVQSEPEYRPLMSEVVQDLSDM 755          
BLAST of FC872980 vs. ExPASy Swiss-Prot
Match: WAKLK_ARATH (Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.030e-22
Identity = 71/246 (28.86%), Postives = 119/246 (48.37%), Query Frame = 3
Query:   75 QFRKKIDTLSKVNHKNFVNLIGFCEEEEPFTRMMVFEYAPNGTLFEHIHIKESEHL-DWGMRLRIAMGMAYCLEHMHQ-LNPPIAHNYLNSSAVHLTEDYAAKLSDL----------SFWNEIAMAEMXXXXXXXXXXXXXXXXXNVYNFGVLLFEMVTGRLPYLVDNGSLE-DWAADYLSGVQPLQQFVDPTLSSFDE----EQLEKLGELIKSCVRADPEKRPTMRDIAAILREITGITPDGAI 761
            +F  ++  LS++NH++ V L+G C E E  T  +V+E+ PNG LF+HIH +  ++   WGMRLRIA+ +A  L ++H   + PI H  + S+ + L E Y  K+SD           + W  +    +                 +VY+FGV+L E++TG  P +  + S E    AD+        +F +   +   +    EQ+  +  L + C+ +  +KRP MR +   L +I     D  +
Sbjct:  491 EFINEVVILSQINHRHVVKLLGCCLETEVPT--LVYEFIPNGNLFQHIHEESDDYTKTWGMRLRIAVDIAGALSYLHSAASSPIYHRDIKSTNILLDEKYRTKVSDFGTSRSVTIDHTHWTTVISGTVGYVDPEYYGSSQYTDKSDVYSFGVVLVELITGEKPVITVSNSQEIRGLADHFRVAMKENRFFEIMDARIRDGCKPEQVMAVANLARRCLNSKGKKRPCMRKVFTDLEKILASQEDSLV 734          
The following BLAST results are available for this feature:
BLAST of FC872980 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 202
Match NameE-valueIdentityDescription
MRH1_ARATH2.497e-7748.72Probable LRR receptor-like serine/threonine-protei... [more]
Y5458_ARATH2.857e-7347.25Probable LRR receptor-like serine/threonine-protei... [more]
Y1634_ARATH2.359e-4333.46Probable LRR receptor-like serine/threonine-protei... [more]
Y1684_ARATH3.422e-2630.71Probable LRR receptor-like serine/threonine-protei... [more]
SRF4_ARATH1.878e-2428.63Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
SRF5_ARATH9.319e-2430.18Protein STRUBBELIG-RECEPTOR FAMILY 5 OS=Arabidopsi... [more]
SRF3_ARATH1.217e-2328.15Protein STRUBBELIG-RECEPTOR FAMILY 3 OS=Arabidopsi... [more]
Y5977_ARATH2.711e-2330.36Probable leucine-rich repeat receptor-like protein... [more]
SRF1_ARATH6.040e-2328.75Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
WAKLK_ARATH1.030e-2228.86Putative wall-associated receptor kinase-like 11 O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BB02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872980 ID=FC872980; Name=FC872980; organism=Citrus clementina; type=EST; length=860bp
CTAATGGAGTTGAAATAGCTGTGGCCTCTGTCTCAGTGGCATCTGCCAAG
GATTGGCCTAAGAACTTAGAAGTGCAGTTTAGGAAGAAGATTGACACGTT
ATCAAAAGTGAACCACAAAAATTTTGTCAATCTTATTGGATTTTGTGAAG
AAGAGGAGCCTTTCACCAGAATGATGGTGTTTGAATATGCTCCTAATGGA
ACACTCTTTGAGCATATACACATTAAAGAATCAGAGCATTTGGACTGGGG
AATGAGGTTGCGGATTGCAATGGGTATGGCTTACTGCCTAGAGCATATGC
ATCAGCTGAACCCACCCATAGCCCACAATTACTTGAACTCTTCAGCTGTC
CATCTGACTGAGGACTATGCAGCCAAATTATCAGACTTAAGCTTCTGGAA
TGAGATAGCCATGGCTGAAATGGCAGCAACTAGCAAAAAACTTTCAAGTG
CACCCTCAGCAAGCCTTGAAAGCAACGTGTACAACTTTGGAGTATTATTA
TTTGAAATGGTAACGGGTAGGCTCCCTTATTTGGTGGACAACGGCTCTCT
AGAAGACTGGGCAGCTGATTATTTGAGTGGAGTGCAACCCCTTCAACAAT
TTGTTGATCCAACTTTAAGCTCTTTTGATGAGGAGCAGCTAGAGAAACTT
GGTGAACTGATAAAATCTTGTGTCCGCGCCGACCCAGAAAAAAGACCGAC
AATGAGAGACATTGCCGCAATATTGAGAGAGATAACCGGAATAACACCAG
ATGGAGCAATCCCAAAACTTTCCCCTCTTTGGTGGGCAGAGATTGAGATT
TTATCTACCGAGGGCATCTAGATTATGAATTTTGGATTGCAAGTATGAAA
AGCTTCAAAT
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