FC872984

Overview
NameFC872984
Unique NameFC872984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872984_ssr22 microsatellite FC872984_ssr22:22..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14815 contig Ccv1_Contig14815:831..1595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC872984 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.350e-59
Identity = 110/207 (53.14%), Postives = 144/207 (69.57%), Query Frame = 1 
Query:  169 AILINGEVSDGQCDDQPTLDP--------RPHSVSITEFGAVGDGKTLNTLAFQNAIFYLKSFADKGGAQLYVPSGKWLTGSFNLTSHLTLFLEKGAVILGSQNPSHWDVVDPLPSYGRGIELPGRRYKSLINGYMLRDVVVTGDNGTIDGQGSVWWDWFSSQSLNYSRPHLVEFISSENVVVSNLTFLNAPAYNIHPVYCSNVHIQ 765
            A+++   VS G+C     L+         R HS S+ +FG VGDG+TLNT AFQ+A+  L  +  +GGAQLYVP+GKWLTGSF+LTSH TLFL + AV+L SQ+ S W V+ PLPSYGRG +    RY SLI G  L DV++TGDNGTIDGQG +WW  F    L Y+RP+L+E + S ++ +SNLT LN+P++N+HPVY  N+ IQ
Sbjct:   30 AVVLLLSVSRGECRKGRILEALEYSAISCRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQLYVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQ 236
The following BLAST results are available for this feature:
BLAST of FC872984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PGLR_VITVI3.350e-5953.14Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BB09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BB09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872984 ID=FC872984; Name=FC872984; organism=Citrus clementina; type=EST; length=765bp
CTTACCAGCCACCTCACCCTCTTCTTTCTTTCTTTCTTTTTCTCTTTTGC
AGTTTGGTGTTTTTGGCTTCTCACTGTTCTCTTCTTGTCTCTTTCGTCCA
CTGTTTGCTGAAGCTTGCGACTCATGAAGATGCCAGTGGCATTGCTTCTG
CTGCTGGCATTGTGCAGTGCTATCTTAATCAATGGAGAAGTAAGTGATGG
ACAATGTGATGATCAACCTACATTAGACCCAAGACCGCATAGTGTGTCAA
TTACTGAGTTTGGTGCTGTTGGTGATGGGAAAACGTTGAACACACTTGCC
TTTCAGAATGCCATTTTTTATCTCAAGTCCTTTGCCGACAAAGGAGGGGC
ACAGCTGTATGTTCCTTCGGGAAAGTGGCTCACTGGAAGTTTCAATCTTA
CCAGCCACCTCACCCTCTTCTTGGAAAAGGGTGCTGTCATTCTTGGATCT
CAGAATCCATCTCACTGGGACGTTGTGGATCCCTTACCCTCATATGGTCG
AGGGATTGAACTTCCTGGAAGAAGATATAAAAGTTTGATAAATGGGTATA
TGCTACGCGATGTGGTAGTAACAGGTGACAATGGAACGATTGATGGTCAG
GGCTCTGTTTGGTGGGATTGGTTCAGTTCTCAGTCCTTAAATTACAGCCG
TCCTCATCTGGTCGAATTTATATCATCAGAAAATGTAGTGGTCTCCAATC
TTACATTCTTGAACGCCCCAGCATATAACATACATCCAGTCTACTGCAGC
AATGTACACATTCAA
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