FC873025

Overview
NameFC873025
Unique NameFC873025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.043e-53
Identity = 94/156 (60.26%), Postives = 124/156 (79.49%), Query Frame = 1
Query:  286 RQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            ++KYCE+IH+T RR TR V VGNV IG  HPIR+Q+MTT+ T+DV  T+E+V+R+ADQG ++VR+TVQG +EADAC  IK  L+++ Y IPLVADIHF P  A+RV +  DK+R+NPGNF D+RA F+Q+ Y D+ Y +E+E IEE F+PLVEKCK
Sbjct:    3 QKKYCEAIHQTERRPTRIVNVGNVGIGGNHPIRIQSMTTSSTRDVEATIEQVIRLADQGCEIVRVTVQGIKEADACEHIKKGLIKRGYQIPLVADIHFYPPAAMRVVDFVDKVRINPGNFVDKRASFKQIVYDDESYAREIERIEEKFTPLVEKCK 158          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 77/149 (51.68%), Postives = 104/149 (69.80%), Query Frame = 1
Query:  307 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V +C DK+R+NPGN+ D+R  F    Y+D++Y   LEH+   FSPLVEKCK
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCK 154          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 77/149 (51.68%), Postives = 104/149 (69.80%), Query Frame = 1
Query:  307 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V +C DK+R+NPGN+ D+R  F    Y+D++Y   LEH+   FSPLVEKCK
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCK 154          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 77/149 (51.68%), Postives = 104/149 (69.80%), Query Frame = 1
Query:  307 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V +C DK+R+NPGN+ D+R  F    Y+D++Y   LEH+   FSPLVEKCK
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCK 154          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.997e-41
Identity = 77/149 (51.68%), Postives = 104/149 (69.80%), Query Frame = 1
Query:  307 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V +C DK+R+NPGN+ D+R  F    Y+D++Y   LEH+   FSPLVEKCK
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQELGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVDKRNMFTGKIYSDEQYAHSLEHLMNKFSPLVEKCK 154          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.286e-39
Identity = 76/144 (52.78%), Postives = 104/144 (72.22%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            RRKT +V VGN+ +GSEH I++Q+MTT  T DV GTV ++  + + G ++VR+TVQG +E  AC +IK+ LVQ+N  IPLVADIHF P  A+ VA+  DK+R+NPGN+ D+R  F    Y+D++Y + LE + E FSPLV KCK
Sbjct:   11 RRKTLSVKVGNLFVGSEHSIKIQSMTTTATTDVEGTVRQIYALQECGCEIVRVTVQGLKEVGACEQIKDRLVQQNVTIPLVADIHFFPQAAIHVADFVDKVRINPGNYVDKRNMFSGKIYSDEQYTRSLERLFEKFSPLVAKCK 154          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.502e-37
Identity = 75/145 (51.72%), Postives = 102/145 (70.34%), Query Frame = 1
Query:  322 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLE-YTDDEYQKELEHIEEVFSPLVEKCK 753
            RRKT TV +GN+ IGS+H I+ Q+MTT  T D+  TVE++  +A+   D+VR+TVQG +EA AC +IK  L+    NIPLVADIHF P  A+ VA+  DK+R+NPGN+ D+R  F+  + YT+  Y + L  +EE F+PLVEKCK
Sbjct:   12 RRKTHTVRIGNLYIGSDHSIKTQSMTTTLTTDIDSTVEQIYALAEHNCDIVRVTVQGIKEAQACEKIKERLIALGLNIPLVADIHFFPQAAMLVADFADKVRINPGNYIDKRNMFKGTKIYTEASYAQSLLRLEEKFAPLVEKCK 156          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=ispG PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.019e-36
Identity = 73/147 (49.66%), Postives = 97/147 (65.99%), Query Frame = 1
Query:  313 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            +T RR T +V +G++ +GSEH I++Q+MTT  T DV  TV ++  + +   D+ R+TVQG +EA AC  IK  L+    +IPLVADIHF P  A+ VA+  DK+R+NPGNF D+R  F    YTD  Y   L  +EE FSPLVEKCK
Sbjct:    9 QTARRYTHSVKIGSLFVGSEHSIKMQSMTTTPTSDVDATVAQICSLVEAKCDIARVTVQGVKEAQACEHIKERLLTMGLDIPLVADIHFFPQAAMHVADFVDKVRINPGNFVDKRNMFSGKTYTDKNYADSLLRLEEKFSPLVEKCK 155          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.471e-35
Identity = 71/147 (48.30%), Postives = 95/147 (64.63%), Query Frame = 1
Query:  313 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            +  RR T +V +GN+ +GSEH I++Q+MTT  T DV  TV ++  + +   ++ R+TVQG +EA AC  IK  L+     IPLVADIHF P  A+ VA+  DK+R+NPGNF D+R  F    YTD  Y   L  +EE F+PLVEKCK
Sbjct:    9 QAARRHTHSVKIGNLYVGSEHSIKMQSMTTTPTADVEATVTQICALVEAKCEIARVTVQGIKEAQACEHIKERLLSMGIAIPLVADIHFFPQAAMHVADFVDKVRINPGNFVDKRNMFTGKTYTDKNYADSLLRLEEKFTPLVEKCK 155          
BLAST of FC873025 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.277e-35
Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 1
Query:  313 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFQQLEYTDDEYQKELEHIEEVFSPLVEKCK 753
            +  RR T +V +GN+ +GS+H I+ Q+MTT  T DV  TV ++  + +   ++ R+TVQG +EA AC  IK  L+    ++PLVADIHF P  A+ VA+  DK+R+NPGNF D+R  F    YTD  Y   L  +EE FSPLVEKCK
Sbjct:    9 QAARRYTHSVKIGNLYVGSDHSIKTQSMTTTPTADVDATVAQICALVEARCEIARVTVQGIKEAQACEHIKERLIALGIDVPLVADIHFFPQAAMHVADFVDKVRINPGNFVDKRNMFTGKIYTDKHYADSLLRLEEKFSPLVEKCK 155          
The following BLAST results are available for this feature:
BLAST of FC873025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_PARUW2.043e-5360.264-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR3.997e-4151.684-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB3.997e-4151.684-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA3.997e-4151.684-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT23.997e-4151.684-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU1.286e-3952.784-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN3.502e-3751.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLFF1.019e-3649.664-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV1.471e-3548.304-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLAB3.277e-3547.624-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873025 ID=FC873025; Name=FC873025; organism=Citrus clementina; type=EST; length=755bp
CACATTTCTCTCTCAGAGTTAGTTCTCACTTCTCAGCATTATAAAAGGTA
GGCGTAGTATTTTGCAAAGATGGCGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAGAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAAGAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAGGAAGCCCCCTATTAGTTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACGGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGAATGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TAGACGGGCTCAGTTTCAGCAGCTAGAGTACACAGACGATGAGTATCAGA
AAGAACTTGAGCATATTGAGGAGGTTTTTAGTCCATTGGTTGAGAAATGT
AAAAA
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