FC873026

Overview
NameFC873026
Unique NameFC873026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10540 contig Ccv1_Contig10540:619..1358. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873026 vs. ExPASy Swiss-Prot
Match: AXR4_ARATH (Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.129e-67
Identity = 127/246 (51.63%), Postives = 173/246 (70.33%), Query Frame = 3 
Query:    3 DQIVETGQIPYEEILKARVLERKSVKVIELGSDEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLDTGIKXXXXXXXXXXXXIRDFVLGSSFGYQWLIRFCCMKKVGSFDVEDNRVLLKGRDRCRAVSEMGRKLNNSFDMAEWGSSEGIKGIPMQILXXXXXXXXXXXXXXRVADALPQAKFVGHSGGRWPQVDSADELAKHIADFVSSLPKTVRQVEEEPIPEHIQKMFD 740
            DQ++ETG +PYEEI+K +  +R+S K IELGS+E  RVLGQVIDT  LAPVHLVLHDSAL +++NWV+EN  SV+S+TL+D+ I             IR+ +L  SFG++ L+ F C K++   D++ +R+LLKGR+   AV     KLN+SFD+A+WG+S+GI GIPMQ++              RVA ALP+AKFV HSG RWPQ   + ELA +I++FVS LPK++R+V EEPIPE +QK+ +
Sbjct:  194 DQMIETGDLPYEEIIKLQNSKRRSFKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALGLASNWVSENWQSVRSVTLIDSSISPALPLWVLNVPGIREILLAFSFGFEKLVSFRCSKEMTLSDIDAHRILLKGRNGREAVVASLNKLNHSFDIAQWGNSDGINGIPMQVIWSSEASKEWSDEGQRVAKALPKAKFVTHSGSRWPQESKSGELADYISEFVSLLPKSIRRVAEEPIPEEVQKVLE 439
The following BLAST results are available for this feature:
BLAST of FC873026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AXR4_ARATH3.129e-6751.63Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2BF12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BF12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873026 ID=FC873026; Name=FC873026; organism=Citrus clementina; type=EST; length=740bp
TTGATCAGATTGTTGAGACTGGGCAAATTCCTTACGAGGAGATACTGAAA
GCTAGGGTTTTGGAGAGGAAGAGTGTTAAAGTTATTGAATTGGGAAGTGA
TGAGGTTGGTAGGGTTTTAGGGCAAGTTATAGATACTTTTAATTTAGCTC
CTGTGCATTTAGTTTTACATGATTCAGCTTTGCCAATGAGTGCTAATTGG
GTTGCTGAAAATCCTGGTTCAGTAAAAAGTCTAACACTTCTAGATACTGG
AATTAAGCCTGCTTTGCCTCTTTTTGCATTGAATTTACCGTTGATTAGGG
ATTTTGTTTTAGGATCTTCGTTTGGATATCAGTGGTTGATTAGGTTTTGT
TGTATGAAGAAGGTTGGCAGTTTTGATGTTGAGGATAATAGAGTGCTTTT
GAAGGGAAGAGATCGGTGTAGAGCTGTTTCAGAGATGGGGAGGAAGCTGA
ATAACAGCTTTGATATGGCAGAATGGGGCAGTTCGGAGGGGATAAAAGGA
ATACCGATGCAAATACTTTGGTCTAGTGTTTGGTCTAAGGAATGGAGTGA
GGAAGGAAGTCGAGTTGCGGATGCACTTCCGCAGGCAAAATTTGTGGGAC
ATTCAGGAGGACGTTGGCCTCAGGTAGACTCTGCTGATGAACTAGCTAAG
CACATTGCTGATTTTGTTTCTTCTTTACCAAAAACTGTTAGACAAGTCGA
GGAGGAGCCCATACCCGAGCATATACAGAAGATGTTTGAT
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