FC873039

Overview
NameFC873039
Unique NameFC873039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10123 contig Ccv1_Contig10123:1..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.914e-53
Identity = 117/189 (61.90%), Postives = 128/189 (67.72%), Query Frame = 3
Query:  291 MDRQGHGGQPTSMGLVGSGAQVPYGTNPYQQNQMAGGPNPGPAVTSVGAIQSTSQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEV 857
            MD+Q HG          SGA + YGTNPYQ N M+         T+       +QPG                           +FW NQ++EIEK  DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEV
Sbjct:    1 MDQQDHGQ---------SGA-MNYGTNPYQTNPMS--------TTAATVAGGAAQPG------QLAFHQIHQQQQQQQLAQQLQAFWENQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEV 165          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.055e-51
Identity = 109/175 (62.29%), Postives = 118/175 (67.43%), Query Frame = 3
Query:  339 GSGAQVPYGTNPYQQNQMAGGPNPG--PAVTSVGAIQSTSQPGGXXXXXXXXXXXXXXXXXXXXXXXXXXSFWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEV 857
            G  + + YG+NPYQ N M   P     PA   +   Q                                 SFW  Q++EIEK  DFKNHSLPLARIKKIMKADEDVRMISAEAPV+FARACEMFILELTLRSWNHTEENKRRTLQKNDIAAA+TRTDIFDFLVDIVPREDL+DEV
Sbjct:    5 GQSSAMNYGSNPYQTNAMTTTPTGSDHPAYHQIHQQQQQQ------------------------LTQQLQSFWETQFKEIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDLRDEV 155          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.266e-46
Identity = 89/103 (86.41%), Postives = 98/103 (95.15%), Query Frame = 3
Query:  546 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDE 854
            FWANQ QEIE   DFKNH+LPLARIKKIMKADEDVRMISAEAPVIFA+ACEMFILELTLR+W HTEENKRRTLQKNDIAAAI+RTD+FDFLVDI+PR++LK+E
Sbjct:   58 FWANQMQEIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEE 160          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 6.593e-46
Identity = 88/103 (85.44%), Postives = 97/103 (94.17%), Query Frame = 3
Query:  546 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDE 854
            FW  Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPR+++KDE
Sbjct:   47 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDE 149          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.611e-46
Identity = 88/103 (85.44%), Postives = 97/103 (94.17%), Query Frame = 3
Query:  546 FWANQYQEIEKVNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDE 854
            FW  Q QEIE+VNDFKNH LPLARIKKIMKADEDVRMISAEAP++FA+ACE+FILELT+RSW H EENKRRTLQKNDIAAAITRTDIFDFLVDIVPRE++K+E
Sbjct:   60 FWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREEIKEE 162          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC_RAT (Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.200e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC_PONAB (Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.200e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC_MOUSE (Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 2.200e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC_HUMAN (Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 2.200e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
BLAST of FC873039 vs. ExPASy Swiss-Prot
Match: NFYC_BOVIN (Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.200e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 3
Query:  543 SFWANQYQEIEK--VNDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLK 848
            SFW    +EI    V DF+   LPLARIKKIMK DEDV+MISAEAPV+FA+A ++FI ELTLR+W HTE+NKRRTLQ+NDIA AIT+ D FDFL+DIVPR++LK
Sbjct:   21 SFWPRVMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPRDELK 124          
The following BLAST results are available for this feature:
BLAST of FC873039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYC9_ARATH1.914e-5361.90Nuclear transcription factor Y subunit C-9 OS=Arab... [more]
NFYC3_ARATH3.055e-5162.29Nuclear transcription factor Y subunit C-3 OS=Arab... [more]
NFYC2_ARATH2.266e-4686.41Nuclear transcription factor Y subunit C-2 OS=Arab... [more]
NFYC1_ARATH6.593e-4685.44Nuclear transcription factor Y subunit C-1 OS=Arab... [more]
NFYC4_ARATH8.611e-4685.44Nuclear transcription factor Y subunit C-4 OS=Arab... [more]
NFYC_RAT2.200e-3368.27Nuclear transcription factor Y subunit gamma OS=Ra... [more]
NFYC_PONAB2.200e-3368.27Nuclear transcription factor Y subunit gamma OS=Po... [more]
NFYC_MOUSE2.200e-3368.27Nuclear transcription factor Y subunit gamma OS=Mu... [more]
NFYC_HUMAN2.200e-3368.27Nuclear transcription factor Y subunit gamma OS=Ho... [more]
NFYC_BOVIN2.200e-3368.27Nuclear transcription factor Y subunit gamma OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BH06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BH06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873039 ID=FC873039; Name=FC873039; organism=Citrus clementina; type=EST; length=859bp
AAAAGAAAGAGAAAAAAAAAAAATCCCTTGATTCTCTCAAAACCCTAAAA
GGGGAAGGTTATATTTTCCAAAATCGGATCTTTTTATTTCATTCTCTCAC
TGTACGGTATTAATAATAACCCAGAAAAAGAGAAAAAATAAAAAGCTTTT
TATTCATCAGTGCCTATTAGATCTCTTACCAAATAAAAGGAAAAAAAAAT
CCCTAAAAAGATTTTCTTTTTCTTTCTTTTCAGGGGTTTCAATCTGGGTG
AAGGAGGAAAAAGCAAAAGAATCAGAAAAGTTGGATTAGTATGGATCGGC
AAGGACACGGTGGACAACCCACATCTATGGGGTTGGTTGGTAGTGGAGCT
CAAGTGCCATACGGCACAAACCCGTATCAGCAGAATCAAATGGCTGGCGG
TCCCAACCCTGGCCCAGCTGTCACATCAGTCGGGGCAATTCAATCTACTA
GTCAGCCAGGAGGTGCTCAGCTTGCACAACACCAACTTGCCTATCAACAA
ATTCATCACCAGCAGCAACAGCAGCTTCAGCAACAACTCCAGTCTTTTTG
GGCCAATCAGTACCAAGAAATTGAAAAGGTTAATGATTTCAAGAATCATA
GCCTTCCTTTAGCAAGGATCAAGAAAATCATGAAGGCCGATGAGGATGTG
AGAATGATATCAGCTGAGGCACCTGTTATATTTGCAAGGGCATGTGAAAT
GTTCATCTTGGAATTGACGCTGCGTTCCTGGAACCACACTGAAGAGAACA
AGAGGAGGACACTCCAAAAGAATGACATTGCGGCAGCAATCACTAGGACT
GATATATTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACCTGAAAGA
TGAAGTACT
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