FC873054

Overview
NameFC873054
Unique NameFC873054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length813
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1176 contig Ccv1_Contig1176:2..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873054 vs. ExPASy Swiss-Prot
Match: PLD3_XENLA (Phospholipase D3 OS=Xenopus laevis GN=pld3 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 62/233 (26.61%), Postives = 98/233 (42.06%), Query Frame = 1 
Query:   97 GIVHAKVWISDCRDVYIGSANNDWKSLTQESASVGLQCHR*S*ILIIAWLQVKEVGIYLVGCPTIA---KKVTXXXXXXXXXCGRLPYTVRPLYVPRDNGDSWKQLFYFATSLQLPLICSPRGTRATLR-------------------ISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVP 729
            GI+H K W+ D    YIGSAN DW+SLT                      QVKE+G  +  C  +A   KK+             LP      Y    N D+  Q+   +T+ Q+ L  SP    AT R                   IS MD+    ++     YW  + + + + V+ ++ NV++L++ W +   +   +L+SL  + +  N+S YN     +E+K + VP
Sbjct:  199 GILHTKFWVVDNEHFYIGSANMDWRSLT----------------------QVKELGATIYNCSCLAQDLKKIFEAYWILGLPNATLPSPWPANYSTPYNKDTPMQVMLNSTASQVYLSSSPPPLSATGRTDDLQSIMNIIDDAKKFVYISVMDYSPTEEFSHPRRYWPEIDNHLRKAVYERNVNVRLLISCWKNSRPSMFTFLRSL--AALHSNTSHYN-----IEVKIFVVP 402
[Close]
BLAST of FC873054 vs. ExPASy Swiss-Prot
Match: PLD3_XENTR (Phospholipase D3 OS=Xenopus tropicalis GN=pld3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.984e-12
Identity = 64/263 (24.33%), Postives = 110/263 (41.83%), Query Frame = 1 
Query:    7 PDFTTEASNLASGRKNVENVTLLLGDWWGSGIVHAKVWISDCRDVYIGSANNDWKSLTQESASVGLQCHR*S*ILIIAWLQVKEVGIYLVGCPTIA---KKVTXXXXXXXXXCGRLPYTVRPLYVPRDNGDSWKQLFYFATSLQLPLICSPRGTRATLR-------------------ISTMDWLGQSQYLKQTVYWSALSSAVSEVVFSKHANVKILVAYWAHFINNTDEYLKSLLYSNVLCNSSKYNKCSGKVEIKYYKVP 729
            PD    A ++++ + +  +V ++       G++H K W+ D    YIGSAN DW+SLT                      QVKE+G  +  C  +A   KK+             LP      Y    N D+  Q+   +T+ Q+ +  SP    AT R                   IS MD+    ++     YW  + + + + V+ ++ NV++L++ W +   +   +L+SL  + +  N S YN     +E+K + VP
Sbjct:  170 PDSPLRAKDISALKDSGADVRVVDLPKLTDGVLHTKFWVVDSEHFYIGSANMDWRSLT----------------------QVKELGATIYNCSCLAEDLKKIFEAYWILGLPNATLPSPWPVNYSTPYNKDTPMQVMLNSTASQVYISSSPPPLSATGRTDDLQSIINIIDDAKKFVYISVMDYSPTEEFSHPRRYWPYIDNHLRKAVYERNVNVRLLISCWQNSRPSMFTFLRSL--AALHSNKSHYN-----IEVKIFVVP 403
The following BLAST results are available for this feature:
BLAST of FC873054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PLD3_XENLA1.163e-1226.61Phospholipase D3 OS=Xenopus laevis GN=pld3 PE=2 SV... [more]
PLD3_XENTR1.984e-1224.33Phospholipase D3 OS=Xenopus tropicalis GN=pld3 PE=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CB02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873054 ID=FC873054; Name=FC873054; organism=Citrus clementina; type=EST; length=813bp
GTATATCCCGACTTCACTACTGAAGCATCTAATCTTGCTTCAGGTAGAAA
AAATGTGGAAAATGTGACTCTATTACTTGGTGATTGGTGGGGTTCAGGCA
TTGTCCATGCCAAAGTTTGGATATCAGATTGCCGTGATGTGTATATTGGA
TCTGCTAATAATGACTGGAAATCTCTAACTCAGGAGTCTGCTTCTGTGGG
GTTACAGTGTCATCGATAGTCCTGAATCTTGATCATCGCATGGTTGCAGG
TGAAGGAAGTTGGAATTTATCTTGTTGGTTGTCCAACAATAGCAAAAAAG
GTCACCTCTCCCTCCAGTTCTTGAGGTTCCTCATGTGGAAGGCTACCCTA
TACTGTCAGACCCTTATATGTTCCGAGAGACAATGGAGACTCCTGGAAGC
AATTATTCTACTTTGCAACCTCATTACAGCTACCTCTCATTTGCTCCCCC
AGAGGAACCAGAGCTACACTTAGGATTAGTACAATGGATTGGCTTGGTCA
ATCCCAATATTTGAAGCAAACTGTTTATTGGTCAGCACTTTCCTCTGCAG
TTTCAGAGGTTGTCTTCTCCAAGCATGCGAATGTGAAGATACTAGTAGCA
TATTGGGCACATTTTATCAACAACACAGATGAGTATCTCAAGTCTCTTCT
ATACTCCAATGTCCTTTGCAATTCTTCGAAGTACAACAAATGTTCTGGCA
AAGTTGAGATCAAATACTATAAGGTGCCAGGATACAACTTGACAGGACCT
GCCATTCAAAATGGAAGCAATACTGGGAATATTTATCCCGGCTTTACCAG
AGTCAATCATGAA
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