FC873062

Overview
NameFC873062
Unique NameFC873062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length826
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873062_ssr418 microsatellite FC873062_ssr418:418..432. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14767 contig Ccv1_Contig14767:76..902. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 425.246 bits (1092), Expect = 2.110e-118
Identity = 211/272 (77.57%), Postives = 225/272 (82.72%), Query Frame = 2
Query:   11 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            MAM RVAS+A  A                      KKIVGVFYK NEYA MNPNFLGC E   G+REWLESKGHQYIVT DKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAG+GSDH+DL      GLTVAEVTGSN VSVAEDELMRILILVRNFLPGHHQVI+GEWNVA +A+RA+DLEGKTVGTVG GRIG+LLLQRL PFNCNLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFD
Sbjct:    1 MAMSRVASTAARAITSPSSLVFTRELQASPGP---KKIVGVFYKANEYAEMNPNFLGCAENALGIREWLESKGHQYIVTPDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNTVSVAEDELMRILILVRNFLPGHHQVINGEWNVAAIAHRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFD 269          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 418.698 bits (1075), Expect = 1.975e-116
Identity = 202/272 (74.26%), Postives = 228/272 (83.82%), Query Frame = 2
Query:   11 MAMKRVASSAINAFAXXXXXXXXXXXXXXXXXXXXKKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            MAM++ A + I A +                    KKIVGVFYK NEYA+ NPNFLGCVE   G+R+WLES+GHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSNVVSVAEDELMRILIL+RNF+PG++QV+ GEWNVAG+AYRA+DLEGKT+GTVG GRIGKLLLQRL PF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+
Sbjct:    1 MAMRQAAKATIRACSSSSSSGYFARRQFNASSGDSKKIVGVFYKANEYATKNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFN 272          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 407.527 bits (1046), Expect = 4.553e-113
Identity = 193/237 (81.43%), Postives = 215/237 (90.72%), Query Frame = 2
Query:  116 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            KKIVGVFYKG EYA  NPNF+GCVEG  G+REWLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYV+AERIKKAKNL+LLLTAG+GSDHIDL      GLTVAEVTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+AYRA+DLEGKTVGTVG GRIG+LLLQRL PFNCNLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+
Sbjct:   28 KKIVGVFYKGGEYADKNPNFVGCVEGALGIREWLESKGHHYIVTDDKEGLNSELEKHIEDMHVLITTPFHPAYVSAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILILLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFN 264          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 5.033e-112
Identity = 187/237 (78.90%), Postives = 214/237 (90.30%), Query Frame = 2
Query:  116 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            KK+VGVFYKG EYA  NPNF+GCV+   G+R WLESKGH+YIVTDDKEG +CELEKHI D HVLI+TPFHPAY+TAERIKKAKNL+LLLTAGVGSDHIDL      GLTVAE+TGSN VSVAED+LMRIL+L+RNFLPGHHQ+++GEWNVAG+A+R +DLEGKTVGTVG GRIG+LLLQRL PFNCNL+YHDRVK+DP+LEKE GAK+EEDLD MLPKCD+VV+N PLTEKTRGMF+
Sbjct:   30 KKVVGVFYKGGEYADKNPNFVGCVDSALGIRGWLESKGHRYIVTDDKEGINCELEKHIEDAHVLITTPFHPAYITAERIKKAKNLELLLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILLLLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFN 266          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 7.522e-108
Identity = 185/237 (78.06%), Postives = 210/237 (88.61%), Query Frame = 2
Query:  116 KKIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            KKIVGVFY+  EYA  NPNF+GCVEG  G+R+WLESKGH YIVTDDKEG + ELEKHI D+HVLI+TPFHPAYVTAE+IKKAK  +LLLTAG+GSDHIDL      GLTVA VTGSN VSVAEDELMRILIL+RNFLPG+ QV+ GEWNVAG+A+RA+DLEGKTVGTVG GR G+LLLQRL PFNCNLLYHDR++++P+LEKE GAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+
Sbjct:   29 KKIVGVFYQAGEYADKNPNFVGCVEGALGIRDWLESKGHHYIVTDDKEGFNSELEKHIEDMHVLITTPFHPAYVTAEKIKKAKTPELLLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILILLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN 265          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 256.529 bits (654), Expect = 1.298e-67
Identity = 124/235 (52.77%), Postives = 167/235 (71.06%), Query Frame = 2
Query:  131 VFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            V Y G  +A   P  LG  E   G+R+W+E +GH  + T DK+G +   +K + D  V+I+TPFHP Y+TAER+ KAKNL+L +TAG+GSDH+DL+       G+TVAEVTGSNVVSVAE  +M IL+LVRNF+P H Q+ +G+WNVA VA    DLE K VGTVG GRIG+ +L+RL PF+C  LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+
Sbjct:    2 VLYDGGSHAKDQPGLLGTTENELGIRKWIEEQGHTLVTTSDKDGENSTFDKELVDAEVIITTPFHPGYLTAERLAKAKNLKLAVTAGIGSDHVDLDAANKTNGGITVAEVTGSNVVSVAEHVVMTILLLVRNFVPAHDQIRNGDWNVAAVAKNEFDLENKVVGTVGVGRIGERVLRRLKPFDCKELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFN 236          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 2.072e-65
Identity = 121/239 (50.63%), Postives = 164/239 (68.62%), Query Frame = 2
Query:  119 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLN--XXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNC-NLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            K++ V Y G ++    P  LG ++   GLR+WLE +GH  + T DK+G +   +K + D  ++I+TPFHP Y+TAER+ +AK L+L +TAG+GSDH+DLN       G+TVAEVTGSNVVSVAE  LM IL+LVRNF+P H Q+  G W+VA  A    DLEGK VGTVG GRIG+ +L+RL PF+C  LLY+D   +  + E E G +   DL+ ML +CD+V +N PL EKT+G+F+
Sbjct:    3 KVLAVLYDGGKHGEEVPELLGTIQNELGLRKWLEDQGHTLVTTCDKDGENSTFDKELEDAEIIITTPFHPGYLTAERLARAKKLKLAVTAGIGSDHVDLNAANKTNGGITVAEVTGSNVVSVAEHVLMTILVLVRNFVPAHEQIQEGRWDVAEAAKNEFDLEGKVVGTVGVGRIGERVLRRLKPFDCKELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFN 241          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 4.044e-61
Identity = 118/237 (49.79%), Postives = 160/237 (67.51%), Query Frame = 2
Query:  119 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXG--LTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFN-CNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGM 820
            K+V V Y   ++A       GC E   G+R+WLE +GH  +VT DKEG +  LEK+I D  V+ISTPFHPAY+T ERI KAK L+LL+ AGVGSDHIDL+     G  ++V EVTGSNVVSVAE  +M +L+LVRNF+P H Q+ISG WNVA +A  + D+EGK + T+G GRIG  +L+RL  FN   LLY+D   +  + E++ GA+   D+  ++ + DIV +N PL   ++G+
Sbjct:    2 KVVLVLYDAGKHAQDEERLYGCTENALGIRDWLEKQGHDVVVTSDKEGQNSVLEKNISDADVIISTPFHPAYITKERIDKAKKLKLLVVAGVGSDHIDLDYINQSGRDISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIISGGWNVAEIAKDSFDIEGKVIATIGAGRIGYRVLERLVAFNPKELLYYDYQSLSKEAEEKVGARRVHDIKELVAQADIVTINCPLHAGSKGL 238          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 209.92 bits (533), Expect = 1.393e-53
Identity = 108/217 (49.77%), Postives = 138/217 (63.59%), Query Frame = 2
Query:  176 LGCVEGGCGLREWLESKGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            LG V G  GLR++LES GH  +VT DK+GPD   E+ + D  V+IS PF PAY+T ERI KAKNL+L LTAG+GSDH+DL       +TVAEVT  N +SVAE  +M IL LVRN+LP H     G WN+A     A+DLE   VGTV  GRIG  +L+RL PF+ +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M +
Sbjct:   51 LGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIN 267          
BLAST of FC873062 vs. ExPASy Swiss-Prot
Match: FDH2_YEAST (Formate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=FDH2 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.479e-50
Identity = 104/250 (41.60%), Postives = 156/250 (62.40%), Query Frame = 2
Query:  119 KIVGVFYKGNEYASMNPNFLGCVEGGCGLREWLESKGHQYIVTDDKEG-PDCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLQLLLTAGVGSDHIDLNXXXXXGLTVAEVTGSNVVSVAEDELMRILILVRNFLPGHHQVISGEWNVAGVAYRAHDLEGKTVGTVGCGRIGKLLLQRLXPFN-CNLLYHDRVKMDPQL---EKETGAKFE---------EDLDTMLPKCDIVVVNTPLTEKTRGMFD 826
            K++ V Y+G ++A      LGC+E   G+R ++E +G++ + T DK+  P   +++ + D  ++I+TPF PAY++  RI +A NL+L +TAGVGSDH+DL       +TV EVTGSNVVSVAE  +  IL+L+RN+  GH Q I+GEW++AGVA   +DLE K + TVG GRIG  +L+RL  FN   LLY+D  ++  +      E    F          E L+ M+ + D+V +N PL + +RG+F+
Sbjct:    5 KVLLVLYEGGKHAEEQEKLLGCIENELGIRNFIEEQGYELVTTIDKDPEPTSTVDRELKDAEIVITTPFFPAYISRNRIAEAPNLKLCVTAGVGSDHVDLEAANERKITVTEVTGSNVVSVAEHVMATILVLIRNYNGGHQQAINGEWDIAGVAKNEYDLEDKIISTVGAGRIGYRVLERLVAFNPKKLLYYDYQELPAEAINRLNEASKLFNGRGDIVQRVEKLEDMVAQSDVVTINCPLHKDSRGLFN 254          
The following BLAST results are available for this feature:
BLAST of FC873062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
FDH_SOLTU2.110e-11877.57Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH_ARATH1.975e-11674.26Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH1_ORYSJ4.553e-11381.43Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH2_ORYSJ5.033e-11278.90Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_HORVU7.522e-10878.06Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH_EMENI1.298e-6752.77Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_NEUCR2.072e-6550.63Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_PICAN4.044e-6149.79Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH_PSESR1.393e-5349.77Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
FDH2_YEAST5.479e-5041.60Formate dehydrogenase 2 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CB10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873062 ID=FC873062; Name=FC873062; organism=Citrus clementina; type=EST; length=826bp
TAATTGGGAGATGGCCATGAAGAGAGTAGCTAGCTCTGCAATTAACGCTT
TTGCTTCGTCGGGATATCTTCGTTCATCGTCGAGGTTTTCTCGACACTAT
GCTTCTTCTGGAAGTAAGAAGATTGTTGGGGTGTTCTACAAGGGCAATGA
ATACGCTTCAATGAATCCCAACTTTCTTGGTTGTGTGGAGGGAGGCTGTG
GTCTGCGTGAATGGCTGGAATCGAAAGGTCACCAATATATTGTCACTGAT
GACAAAGAGGGACCAGACTGTGAACTAGAGAAACATATTCCTGATCTCCA
CGTCCTCATATCTACCCCCTTCCACCCTGCCTATGTTACGGCGGAAAGGA
TTAAGAAGGCCAAAAATTTGCAACTGCTTCTCACTGCTGGAGTTGGCTCT
GATCATATTGATCTAAATGCTGCTGCTGCTGCTGGTTTAACTGTTGCTGA
AGTTACTGGAAGCAATGTGGTTTCAGTTGCTGAGGACGAGCTTATGAGAA
TCCTTATTCTTGTCCGTAATTTCTTACCTGGACACCATCAAGTTATCAGT
GGGGAATGGAATGTTGCCGGTGTTGCTTATAGAGCTCATGATCTTGAAGG
AAAGACAGTGGGAACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCC
AACGACTTANACCTTTCAATTGTAACCTCCTTTATCATGACCGGGTGAAG
ATGGATCCTCAATTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCT
AGATACTATGCTTCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAA
CAGAAAAGACGAGAGGGATGTTTGAC
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