FC873069

Overview
NameFC873069
Unique NameFC873069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig989 contig Ccv1_Contig989:506..1118. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.801e-38
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFM-HSEHAPLSN 325
            +IEGVVMEIIITF LVYTVYATAADPKKGSLGTIAP+AIG IVGANILAAGPFSGGSMNPARSFGPAVA+G+F  +W+YWV              NVFM  SEH PL++
Sbjct:  139 SIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPLAS 247          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.658e-38
Identity = 78/108 (72.22%), Postives = 87/108 (80.56%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPLSN 325
            A EGVVMEII+TFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANIL AGPFSGGSMNPARSFGPAVASG++ + WIYWV               V+M  +HAP+++
Sbjct:  138 AFEGVVMEIIVTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGDYTNIWIYWVGPLVGGGLAGLVYRYVYMCGDHAPVAS 245          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.778e-38
Identity = 83/112 (74.11%), Postives = 88/112 (78.57%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL--SNDY 331
            AI+GVVMEIIITF LVYTVYATAADPKKGSLG IAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASG+F  NWIYW               +VF+ + HAPL  S DY
Sbjct:  139 AIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFI-TAHAPLPTSEDY 249          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.150e-38
Identity = 78/109 (71.56%), Postives = 84/109 (77.06%), Query Frame = 2
Query:    5 IEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPLSNDY 331
            +EGVVMEI+ITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA+GNF  NW+YWV              +VF+ S       DY
Sbjct:  139 LEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFIGSYQPVADQDY 247          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 6.899e-37
Identity = 73/80 (91.25%), Postives = 77/80 (96.25%), Query Frame = 2
Query:    5 IEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            IEGVVMEI+ITF LVYTVYATAADPKKGSLGTIAP+AIGFIVGANILAAGPFSGGSMNPARSFGPAVA+GNF  NW+YWV
Sbjct:  139 IEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWV 218          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.537e-36
Identity = 79/111 (71.17%), Postives = 85/111 (76.58%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHS-EHAPLSNDY 331
            AIEGVVMEI++TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV SG+F   WIYWV              +VF+ S   AP +  Y
Sbjct:  139 AIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIGSYAPAPTTESY 249          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.622e-36
Identity = 79/111 (71.17%), Postives = 85/111 (76.58%), Query Frame = 2
Query:    5 IEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL--SNDY 331
            ++GVVMEIIITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV +G+F  NWIYW               +VF+   H PL  S DY
Sbjct:  140 LQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIGC-HTPLPTSEDY 249          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.472e-36
Identity = 79/110 (71.82%), Postives = 84/110 (76.36%), Query Frame = 2
Query:    8 EGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHAPL--SNDY 331
            +GVVMEIIITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV +G+F  NWIYW               +VF+   H PL  S DY
Sbjct:  141 QGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIGC-HTPLPTSEDY 249          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.963e-36
Identity = 70/80 (87.50%), Postives = 76/80 (95.00%), Query Frame = 2
Query:    5 IEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWV 244
            +EGVV E++ITF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVA+G+F  NW+YWV
Sbjct:  139 LEGVVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGDFAGNWVYWV 218          
BLAST of FC873069 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.301e-35
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 2
Query:    2 AIEGVVMEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGNFQDNWIYWVXXXXXXXXXXXXXXNVFMHSEHA 313
            A+EGVVMEI++TF LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV SG+    WIYWV              +VF+ S  A
Sbjct:  139 AVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLVGGALAGLIYGDVFIGSYEA 242          
The following BLAST results are available for this feature:
BLAST of FC873069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
TIP21_ARATH2.801e-3873.39Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP22_ORYSJ3.658e-3872.22Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP_ANTMA4.778e-3874.11Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP21_ORYSJ8.150e-3871.56Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE6.899e-3791.25Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP22_ARATH1.537e-3671.17Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP1_TOBAC2.622e-3671.17Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP2_TOBAC4.472e-3671.82Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP21_MAIZE9.963e-3687.50Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP23_ARATH1.301e-3572.12Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC05FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873069 ID=FC873069; Name=FC873069; organism=Citrus clementina; type=EST; length=613bp
AGCCATTGAAGGAGTTGTGATGGAGATCATCATCACATTTGGTTTGGTCT
ACACGGTCTATGCCACGGCAGCTGACCCCAAGAAGGGATCATTGGGCACC
ATTGCACCCATTGCCATTGGTTTCATTGTCGGTGCCAACATCCTGGCCGC
CGGCCCATTCTCCGGTGGTTCCATGAACCCGGCCCGTTCCTTCGGGCCTG
CCGTTGCCAGCGGCAACTTCCAGGACAACTGGATCTACTGGGTTGGCCCT
CTCATTGGCGGCGGCCTTGCGGGGCTCATCTATGGCAATGTGTTCATGCA
CTCTGAACATGCACCCCTATCTAATGACTATTAATTCATTAGTTAAACTT
TGTTTAAAAGTTTAGTTAAATCATTTGATCACCTGCTTTTGGCTCTTTCT
TTTTTGTAATAAAAGAAGGAAAAGCAGCTTTGGCTCTTTCTTCTTTTCTT
CTTTAGTTTCTTGGTATCCTTCTTTTTAAATCATTTCTTTTGGAGGTTGT
AAAAAGTCTTTGTTGTGGTGGTCCATTGCGGCTTTTCTGACGATAATGGA
TGGATTGGGAGACATGCTTGAATGACACTCTTTAGTCTTTAAAAAAAAAA
AAAAAAAAAAAAA
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