FC873070

Overview
NameFC873070
Unique NameFC873070
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length784
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14818 contig Ccv1_Contig14818:11..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.011e-42
Identity = 116/269 (43.12%), Postives = 161/269 (59.85%), Query Frame = 2
Query:   26 MALNLLSSIPAACNFTRLSLPLSSKV----------NGFVPPITRVQYHVAASTTPIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN------KSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLHW 784
            MAL LL+S+P   NF+R+  P+SSK           NG++    +       ST+P       I+RRSA+Y P+IW+ DYI+SL  +Y GE+  RQ+  LKEQV  ML    KVV  +PL QLELI+ L RLG+SYHFE+EIKR LD ++N +        ++LYATALKFR+LRQ+GY+   +E F+ F DE+G FK +   +D KGM               +I  +A  F+T +L E+V      ++ +++L TLVNH+LE PLHW
Sbjct:    1 MALKLLTSLPMY-NFSRV--PVSSKDPILLVTSRTRNGYLARPVQCMVANKVSTSP------DILRRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMMLH---KVV--NPLEQLELIEILQRLGLSYHFEEEIKRILDGVYNNDHGGDTWKAENLYATALKFRLLRQHGYSVS-QEVFNSFKDERGSFK-ACLCEDTKGM-LSLYEASFFLIEGENILEEARDFSTKHLEEYV-----KQNKEKNLATLVNHSLEFPLHW 247          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.612e-40
Identity = 106/244 (43.44%), Postives = 138/244 (56.56%), Query Frame = 2
Query:   68 FTRLSLPLSSKVNGFVPPITRVQYHVAASTTPIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIH-----NKNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLHW 784
            FT  +  +++K +   P    +Q  +A S +       TI+RRSA+Y P IWSFD+IQSL  KYKGE Y  +  KLKE+V  ML     V   + L QLELID L RLG+SYHFE+EI   L         NKN    LYATAL+FR+LR+YGY  P +E F+ F DE G FK S  +DD KG+               +I  +A  FTT YL  +V+  D     ++++  LV HALE+PLHW
Sbjct:   33 FTPKTSNITTKKSRSRPNCNPIQCSLAKSPSSDT---STIVRRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKML-----VGMENSLVQLELIDTLQRLGISYHFENEIISILKEYFTNISTNKNPKYDLYATALEFRLLREYGYAIP-QEIFNDFKDETGKFKASIKNDDIKGV-LALYEASFYVKNGENILEEARVFTTEYLKRYVMMIDQNIILNDNMAILVRHALEMPLHW 266          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 88/214 (41.12%), Postives = 122/214 (57.01%), Query Frame = 2
Query:  161 PIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEI-----KRTLDRIHNKNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEK-GIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLHW 784
            P   +     RRSA+YGP IWSFD++QSL  +YKGESY  +L KL++ V  ML     +   + L QLELID + RLG+SY FE+EI     ++  +   N N N  LYATAL+FR+LRQYG+  P +E F+ F + K G FK ++ S+D  G                SI  +A  FTT  L ++ +   +  ++   +  LVNHALE+PL W
Sbjct:   67 PSSTITNNSDRRSANYGPPIWSFDFVQSLPIQYKGESYTSRLNKLEKDVKRML-----IGVENSLAQLELIDTIQRLGISYRFENEIISILKEKFTNNNDNPNPNYDLYATALQFRLLRQYGFEVP-QEIFNNFKNHKTGEFK-ANISNDIMG-ALGLYEASFHGKKGESILEEARIFTTKCLKKYKLMSSSNNNNMTLISLLVNHALEMPLQW 272          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 83/207 (40.10%), Postives = 123/207 (59.42%), Query Frame = 2
Query:  182 TIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN-----KSLYATALKFRILRQYGYNTPV-KETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLHW 784
            T+ RRSA+Y P+IW  D++QSL+S Y  E+Y R+ E+L+ +V   ++       ++PL QLELIDNL RLG+++ FE EI+  L+ I+N N +     ++LYAT+L+FR+LRQ+GY  PV +E F+ F D++G F      DD KG+               SI  +A  FT+ +L E +I  +    +D  +      ALELPLHW
Sbjct:   50 TVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKD-----VIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYNNNKDYNWRKENLYATSLEFRLLRQHGY--PVSQEVFNGFKDDQGGF----ICDDFKGI-LSLHEASYYSLEGESIMEEAWQFTSKHLKEVMISKN--MEEDVFVAEQAKRALELPLHW 242          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 80/203 (39.41%), Postives = 114/203 (56.16%), Query Frame = 2
Query:  188 IRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNT---NKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHD-DEHLCTLVNHALELPLHW 784
            IRRS DY P++W F+YIQSL++ YK + +  +  +L  QV  +L+     V ++ + QLELID+L  LG+SY F+DEIK+ L  IHN+     N  LY TAL FRILRQ+G+N   ++ F  F  EK     ++ + D KGM               ++   A  F+T  L E   K D    + DE L + + H+L+LPLHW
Sbjct:   51 IRRSGDYQPSLWDFNYIQSLNTPYKEQRHFNRQAELIMQVRMLLK-----VKMEAIQQLELIDDLQYLGLSYFFQDEIKQILSSIHNEPRYFHNNDLYFTALGFRILRQHGFNVS-EDVFDCFKIEKCSDFNANLAQDTKGMLQLYEASFLLREGEDTL-ELARRFSTRSLRE---KFDEGGDEIDEDLSSWIRHSLDLPLHW 243          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.154e-24
Identity = 77/221 (34.84%), Postives = 116/221 (52.49%), Query Frame = 2
Query:  152 STTPIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTNK-----------SLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLH 781
            S TP +P+   + RRSA+Y P++W  +Y+ SL + Y  E    ++  LK++VS ML + + +     L QLELID L RLGVSYHFE EIK+TL  +H KN               LYATAL+FR+LRQ+G++   ++ F       G   +     D KG+              + + +++  +TT  L ++V  + N +     L  +V HALE+P H
Sbjct:   16 SKTPSQPL---VSRRSANYQPSLWQHEYLLSLGNTYVKEDNVERVTLLKQEVSKMLNETEGL-----LEQLELIDTLQRLGVSYHFEQEIKKTLTNVHVKNVRAHKNRIDRNRWGDLYATALEFRLLRQHGFSI-AQDVFD------GNIGVDLDDKDIKGILSLYEASYLSTRIDTKL-KESIYYTTKRLRKFVEVNKN-ETKSYTLRRMVIHALEMPYH 219          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.338e-23
Identity = 74/207 (35.75%), Postives = 112/207 (54.11%), Query Frame = 2
Query:  188 IRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKN--------TNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLHW 784
            IRRS +Y P +W  +YIQSL++ Y  E +  +  +L  QV  +L++      ++P+ QLELI +L  LG+S  F+DEIK  L  I+N++            LY TAL FR+LRQ+G+N   ++ F+ F +EKGI   +S + D KGM               ++   A  F T  L + + +  N    DE+L   + H+L+LPLHW
Sbjct:   54 IRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKE-----KMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNIS-QDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTL-ELAREFATKCLQKKLDEGGN--EIDENLLLWIRHSLDLPLHW 251          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: 5EAS_TOBAC (Aristolochene synthase OS=Nicotiana tabacum GN=EAS3 PE=1 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.804e-23
Identity = 75/204 (36.76%), Postives = 104/204 (50.98%), Query Frame = 2
Query:  176 DQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDD-KVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKNTN-KSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLH 781
            ++ I+R  AD+ P++W   ++         E YA+++E LKEQ   ML     K+ D      L LID + RLG+SYHFE EI   LD+I+N+N+N   L  +AL+FR+LRQ+G+N    E FS+F DE G FK  S + D  G+                I  DA +F+T +L           H    L   V HALE  LH
Sbjct:   10 EEEIVRPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADT-----LNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCNDLCTSALQFRLLRQHGFNIS-PEIFSKFQDENGKFK-ESLASDVLGL-LNLYEASHVRTHADDILEDALAFSTIHL------ESAAPHLKSPLREQVTHALEQCLH 199          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.161e-22
Identity = 68/201 (33.83%), Postives = 107/201 (53.23%), Query Frame = 2
Query:  191 RRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDR---IHNKNTNKSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLHW 784
            RR+  Y PT+W F  IQ  DS+YK E +  +   +  QV+ +LQ+     ++D + +LELID+L RLG+S HF+ EI   L+     +N+     LY+TAL+F++LRQY ++   +E F  F ++KG     S  DD +G+               ++   A  F T +L + V+   +I     +L + +  ALELP HW
Sbjct:   57 RRTGGYQPTLWDFSTIQLFDSEYKEEKHLMRAAGMIAQVNMLLQE-----EVDSIQRLELIDDLRRLGISCHFDREIVEILNSKYYTNNEIDESDLYSTALRFKLLRQYDFSVS-QEVFDCFKNDKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLHL-ARDFATKFLHKRVLVDKDI-----NLLSSIERALELPTHW 245          
BLAST of FC873070 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.161e-22
Identity = 72/218 (33.03%), Postives = 109/218 (50.00%), Query Frame = 2
Query:  143 VAASTTPIKPVDQTIIRRSADYGPTIWSFDYIQSLDSKYKGESYARQLEKLKEQVSAMLQQDDKVVDLDPLHQLELIDNLHRLGVSYHFEDEIKRTLDRIHNKN-TN---KSLYATALKFRILRQYGYNTPVKETFSRFMDEKGIFKLSSHSDDCKGMXXXXXXXXXXXXXXSSIFRDATSFTTAYLXEWVIKHDNIKHDDEHLCTLVNHALELPLHW 784
            +   TTP      T+ RRSA+Y P+ W   ++ S+++K+  +   R+ + LKE+V  ML  + K      L QLE ID+L +LGVSYHFE EI   L   + K+ TN     L+ATAL+FR+ RQ+G+N   ++ F  FM+  G F      DD  G+               ++      F T  L ++V  H N       +  +V  AL++P +W
Sbjct:   31 IVTETTPCNK-SPTVQRRSANYQPSRWDHHHLLSVENKFAKDKRVRERDLLKEKVRKMLNDEQKTY----LDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHATALEFRLFRQHGFNVS-EDVFDVFMENCGKF----DRDDIYGLISLYEASYLSTKLDKNLQIFIRPFATQQLRDFVDTHSNEDFGSCDMVEIVVQALDMPYYW 238          
The following BLAST results are available for this feature:
BLAST of FC873070 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
MYRS_QUEIL5.011e-4243.12Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS2_CANSA1.612e-4043.44(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
TPS1_CANSA1.616e-3241.12(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
RLC1_CITLI1.158e-3040.10(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
SSS_SALOF1.014e-2639.41(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
OCIS_ARATH6.154e-2434.84(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
BPPS_SALOF2.338e-2335.75(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
5EAS_TOBAC6.804e-2336.76Aristolochene synthase OS=Nicotiana tabacum GN=EAS... [more]
SCS_SALOF1.161e-2233.831,8-cineole synthase, chloroplastic OS=Salvia offi... [more]
MYRS1_ARATH1.161e-2233.03Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873070 ID=FC873070; Name=FC873070; organism=Citrus clementina; type=EST; length=784bp
AATCCTTGAAATTATATTCTAAGTCATGGCTCTTAATCTGCTCTCTTCAA
TTCCTGCGGCATGCAATTTCACCAGATTATCATTACCATTATCAAGCAAA
GTTAATGGCTTTGTTCCTCCTATTACTCGAGTCCAATATCACGTGGCTGC
ATCCACCACTCCTATTAAGCCTGTCGATCAAACCATTATTAGGCGATCTG
CCGATTACGGGCCAACCATTTGGAGTTTTGATTATATTCAATCACTTGAC
AGTAAATATAAGGGAGAATCGTACGCCAGACAATTGGAAAAGCTGAAGGA
GCAAGTAAGCGCGATGCTACAGCAGGATGATAAAGTGGTGGATTTGGATC
CTTTACATCAACTTGAGCTCATCGATAATCTGCACAGACTTGGAGTATCT
TATCACTTTGAGGATGAAATAAAAAGAACTTTGGATAGGATACACAACAA
GAATACAAATAAAAGTTTATATGCCACAGCACTCAAATTTAGAATCCTAA
GGCAATATGGTTACAATACCCCTGTTAAAGAAACTTTTTCACGTTTCATG
GATGAGAAGGGGATCTTTAAGTTATCAAGCCACAGTGACGACTGCAAAGG
AATGTTAGCTCTCTATGAAGCTGCATACCTCCTGGTAGAAGAAGAAAGCA
GTATCTTTCGTGATGCGACAAGTTTCACCACCGCATATCTCANAGAATGG
GTAATCAAGCATGATAATATTAAACATGATGATGAACATCTTTGTACATT
AGTTAATCATGCTTTGGAACTTCCACTACATTGG
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