FC873074

Overview
NameFC873074
Unique NameFC873074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14558 contig Ccv1_Contig14558:379..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULTO (Probable spermidine synthase OS=Sulfolobus tokodaii GN=speE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.714e-17
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQ--PFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEED 414
            DP++  P   LYTK FYE +   +++  GI      P+      E FS IYNTIK VFK V A   +VP+F   WG+V ASD+  P   + EEI+NRIK RI+  L + +G + ++  ++ K +   L  E  + T E+
Sbjct:  161 DPIKDSPSQMLYTKEFYEEV--KRISKWGIVTQATSPSFSL---ETFSIIYNTIKHVFKKVSAGITYVPAFDGLWGFVYASDEVNPAEFSKEEINNRIKERIDGSLRFYDGETHITMFSIPKHIREVLEKENKISTREN 294          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULSO (Probable spermidine synthase OS=Sulfolobus solfataricus GN=speE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 50/141 (35.46%), Postives = 79/141 (56.03%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 426
            DP++    Y LYTK FYE+ L+  LN+ G  VTQA         EV+ +IYNTIK+VFK   A   ++ SF   WG+V    +P  ++ +E+D++I  RI+ +L + +G S   S ++ K +       T + TE+D  ++
Sbjct:  162 DPIKNSTSYMLYTKEFYEK-LREILNERGGIVTQATSPSFSL--EVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVRPDLLSEDEVDSKINERIDGQLRFYDGYSHKISFSLPKNIKSEFQKITKISTEKDPIYV 299          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULIY (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=speE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 426
            DP++    Y LYTK FYE+ L+  LN  G  VTQA         EV+ +IYNTIK+VFK   A   ++ SF   WG+V    +P  ++ +E+++RI+ RI+ +L + +  S   S ++ K +       T V TE+D  ++
Sbjct:  162 DPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQATSPSFSL--EVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVRPDLLSEDEVNSRIRERISGQLRFYDDYSHKISFSLPKNIKSEFKKITKVSTEKDPIYV 299          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULIN (Probable spermidine synthase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=speE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 426
            DP++    Y LYTK FYE+ L+  LN  G  VTQA         EV+ +IYNTIK+VFK   A   ++ SF   WG+V    +P  ++ +E+++RI+ RI+ +L + +  S   S ++ K +       T V TE+D  ++
Sbjct:  162 DPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQATSPSFSL--EVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVRPDLLSEDEVNSRIRERISGQLRFYDDYSHKISFSLPKNIKSEFKKITKVSTEKDPIYV 299          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULIM (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=speE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 426
            DP++    Y LYTK FYE+ L+  LN  G  VTQA         EV+ +IYNTIK+VFK   A   ++ SF   WG+V    +P  ++ +E+++RI+ RI+ +L + +  S   S ++ K +       T V TE+D  ++
Sbjct:  162 DPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQATSPSFSL--EVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVRPDLLSEDEVNSRIRERISGQLRFYDDYSHKISFSLPKNIKSEFKKITKVSTEKDPIYV 299          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULIL (Probable spermidine synthase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=speE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 426
            DP++    Y LYTK FYE+ L+  LN  G  VTQA         EV+ +IYNTIK+VFK   A   ++ SF   WG+V    +P  ++ +E+++RI+ RI+ +L + +  S   S ++ K +       T V TE+D  ++
Sbjct:  162 DPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQATSPSFSL--EVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVRPDLLSEDEVNSRIRERISGQLRFYDDYSHKISFSLPKNIKSEFKKITKVSTEKDPIYV 299          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULIK (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=speE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 426
            DP++    Y LYTK FYE+ L+  LN  G  VTQA         EV+ +IYNTIK+VFK   A   ++ SF   WG+V    +P  ++ +E+++RI+ RI+ +L + +  S   S ++ K +       T V TE+D  ++
Sbjct:  162 DPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQATSPSFSL--EVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVRPDLLSEDEVNSRIRERISGQLRFYDDYSHKISFSLPKNIKSEFKKITKVSTEKDPIYV 299          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULIA (Probable spermidine synthase OS=Sulfolobus islandicus (strain M.16.27) GN=speE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.233e-16
Identity = 50/141 (35.46%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASDQPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 426
            DP++    Y LYTK FYE+ L+  LN  G  VTQA         EV+ +IYNTIK+VFK   A   ++ SF   WG+V    +P  ++ +E+++RI+ RI+ +L + +  S   S ++ K +       T V TE+D  ++
Sbjct:  162 DPIKDSTSYMLYTKEFYEK-LRGILNQGGGIVTQATSPSFSL--EVYVTIYNTIKEVFKEASASYTYMASFDGLWGFVYGGVRPDLLSEDEVNSRIRERISGQLRFYDDYSHKISFSLPKNIKSEFKKITKVSTEKDPIYV 299          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_SULAC (Probable spermidine synthase OS=Sulfolobus acidocaldarius GN=speE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 51/139 (36.69%), Postives = 74/139 (53.24%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASD--QPFSINAEEIDNRIKSRINAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEED 414
            DP++  P   LYT  FY R LK  +  NG  VTQA         + F+ IY+T+K VFK+V A   +VPSF   WG++ ASD   P  +N  +I++RIK R+   L + +G +      + K +   + NE  V T E+
Sbjct:  161 DPIQDSPSQLLYTSEFY-RDLKSIITPNGGLVTQATSPSFSL--DTFAIIYSTLKTVFKNVSAGITYVPSFDGLWGFIYASDVTNPAHLNRNQINDRIKERVTGSLRFYDGETHEMLFRVPKYIREKIENEKRVSTREN 296          
BLAST of FC873074 vs. ExPASy Swiss-Prot
Match: SPEE_AERPE (Probable spermidine synthase OS=Aeropyrum pernix GN=speE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.805e-14
Identity = 51/145 (35.17%), Postives = 80/145 (55.17%), Query Frame = 1
Query:    4 DPVEGGPCYQLYTKSFYERILKPKLNDNGIFVTQAGPAGIFTHKEVFSSIYNTIKQVFKHVVAYTAHVPSFADTWGWVMASD--QPFSINAEE-IDNRIKSRI-NAELLYLNGASFLSSTTMNKAVYLSLLNETHVYTEEDARFI 426
            DP+E GP  +LY++ +Y R++K  +N  G+FVTQA      T  E  + I NT+ +VFKHV +Y  +VPSF   WG+V+ASD   P  +      + R+  ++  AEL +L+ AS L    + K    ++  E    T ++  F+
Sbjct:  171 DPLEAGPATRLYSEEYY-RMVKDVMNPGGVFVTQAVSISHLT--EYHAIIRNTVARVFKHVESYGVYVPSFDSMWGFVVASDDKDPRILGDRGFFETRLSHQLQGAELRFLDYASMLHMLNIPKMYREAIAREKRYATLDNQVFL 312          
The following BLAST results are available for this feature:
BLAST of FC873074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SPEE_SULTO1.714e-1738.13Probable spermidine synthase OS=Sulfolobus tokodai... [more]
SPEE_SULSO2.239e-1735.46Probable spermidine synthase OS=Sulfolobus solfata... [more]
SPEE_SULIY3.233e-1635.46Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIN3.233e-1635.46Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIM3.233e-1635.46Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIL3.233e-1635.46Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIK3.233e-1635.46Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULIA3.233e-1635.46Probable spermidine synthase OS=Sulfolobus islandi... [more]
SPEE_SULAC2.096e-1536.69Probable spermidine synthase OS=Sulfolobus acidoca... [more]
SPEE_AERPE8.805e-1435.17Probable spermidine synthase OS=Aeropyrum pernix G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CC12FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873074 ID=FC873074; Name=FC873074; organism=Citrus clementina; type=EST; length=733bp
GCTGACCCAGTTGAAGGGGGACCTTGCTATCAACTCTACACTAAATCTTT
CTACGAACGAATTCTGAAGCCTAAGCTCAATGACAATGGCATCTTTGTTA
CCCAGGCTGGACCAGCAGGCATTTTCACCCACAAAGAGGTGTTCTCATCC
ATTTACAACACCATCAAGCAGGTCTTCAAGCATGTGGTGGCATACACTGC
TCATGTGCCATCTTTTGCAGATACCTGGGGATGGGTTATGGCGTCAGACC
AACCGTTCTCTATCAATGCTGAGGAAATCGACAACAGGATCAAGAGCAGG
ATTAATGCTGAATTACTCTATCTAAATGGCGCTTCATTCCTCTCCTCTAC
CACCATGAACAAGGCTGTTTATTTATCGCTGTTGAATGAGACTCATGTCT
ACACCGAGGAAGATGCAAGATTTATTCATGGACATGGTGTGGCCTATAAT
AACAGCCATTGAGGTCTTAATTAGCCTCTATATGGTTGGGGGAATTGCTG
TACAGAGAGAAGAAAAAAGCAAAACAATTTAGAGGGTTGGGATATGGAAT
GTTTAAGTTAAAAAACTTCTCTAGAGAAATCAATTTGTTGAAAAGCATTT
GGTTTTTAGACAATATTGTTGGTGTTGGCTCCATTGGATTGTTTATAGGA
GTCAATATGTTATATAGATAGTCATAATATGACAGCTTTTTTCAAGTTTT
ATTAATGAATCTTGAGGCATTCCTCCGTTCAAG
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