FC873076

Overview
NameFC873076
Unique NameFC873076
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1180 contig Ccv1_Contig1180:1..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.167e-36
Identity = 73/89 (82.02%), Postives = 84/89 (94.38%), Query Frame = 2
Query:  521 EEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            +++R E+YLFK+V+IGDSAVGKSNLL R+AR+EF PNSK+TIGVEFQTQ M I+GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VY
Sbjct:    4 DDERGEEYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.053e-35
Identity = 72/90 (80.00%), Postives = 84/90 (93.33%), Query Frame = 2
Query:  518 SEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            S+++  E+YLFK+V+IGDSAVGKSNLL+R+AR+EF  NSK+TIGVEFQTQ M+I GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VY
Sbjct:    3 SDDEGREEYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVY 92          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.377e-31
Identity = 69/94 (73.40%), Postives = 80/94 (85.11%), Query Frame = 2
Query:  506 MAFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            MA Y  +D   DYLFK+VLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ ++I+GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    1 MAGYKADDEY-DYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 93          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.349e-31
Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 2
Query:  515 YSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            Y E  +  DY+FKVVLIGDSAVGKS LLARFAR+EF  +SK+TIGVEFQT+ + I+ + VKAQIWDTAGQER+RAVTSAYYRGAVGA+LVY
Sbjct:    8 YGEVGQKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVY 98          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.068e-31
Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 2
Query:  509 AFYSEEDRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            A Y  ED   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    3 AGYRAEDDY-DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVY 94          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 4.007e-31
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 4.007e-31
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 4.007e-31
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.007e-31
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91          
BLAST of FC873076 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 4.007e-31
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  527 DRAEDYLFKVVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMDINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVY 787
            D   DYLFKVVLIGDS VGKSNLL+RF R+EF   SKSTIGVEF T+ + ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGALLVY
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 91          
The following BLAST results are available for this feature:
BLAST of FC873076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 372
Match NameE-valueIdentityDescription
ARA4_ARATH3.167e-3682.02Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH2.053e-3580.00Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RB11E_LOTJA1.377e-3173.40Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RGP1_ORYSJ2.349e-3174.73Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RIC2_ORYSJ3.068e-3175.27Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11B_RAT4.007e-3175.86Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]
RB11B_MOUSE4.007e-3175.86Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11B_HUMAN4.007e-3175.86Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
RB11B_DISOM4.007e-3175.86Ras-related protein Rab-11B OS=Discopyge ommata PE... [more]
RB11B_BOVIN4.007e-3175.86Ras-related protein Rab-11B OS=Bos taurus GN=RAB11... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CD02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873076 ID=FC873076; Name=FC873076; organism=Citrus clementina; type=EST; length=789bp
GAAAACCGCGTCATTGTATTTGTTCTCTCCAGAGTCCAGAACCAACCCAT
TATAAAATCACTTCATTTTCATCATCAGATCCATTTCTACTGTTCTCATT
TCGTCACAAATCTGAGATACGAGGGACAGAGAGCCACCTCGGCGTCATTA
ACCGGCTGACAAAGGAGCGTATCAACTGGGAGCGAGAGCTGAAGTTGGGT
CTGTAGTGGTAGAAGGGAAAGAAGTTAGTTTAGTAGAGGTTTTCAGTTCC
TGATGTTGCTTGAAGCAGCGGGAACCTTAGATCCTGTGTCGCTTTGGAAG
GCAAGATTGGAGTTTGACCATATTGTCCTGATAGATTTGCACACGAGTGT
AAGGAAGCATCGGGTGGGGTAGAAGTTACTGGTTTTGATTGTACCGCTCA
ATACTACATTCAGAAGAAAGTTGGTCCCTGAAAAGATCTACAACCCAGAA
GTCTATTTGTTTGCCCATATGGATCAATAGTGTAAGAATTCTGTGAAAGT
AGAAAATGGCTTTTTATTCTGAGGAGGACAGAGCTGAGGATTATCTTTTC
AAGGTTGTTCTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTGCTCGC
TAGATTTGCAAGAGATGAGTTCTACCCGAATTCAAAATCGACCATCGGAG
TGGAATTCCAAACCCAAAAGATGGATATCAATGGAAAGGAAGTTAAGGCA
CAGATCTGGGACACAGCAGGTCAGGAACGGTTCAGGGCTGTTACATCTGC
ATACTACAGGGGTGCAGTTGGAGCTCTCTTGGTCTATGA
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