FC873080

Overview
NameFC873080
Unique NameFC873080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig56 contig Ccv1_Contig56:14..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873080 vs. ExPASy Swiss-Prot
Match: PST2_ARATH (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBT PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 42/96 (43.75%), Postives = 56/96 (58.33%), Query Frame = 2 
Query:  107 SMAKNPAATRAKRGGLIVVAKAASSKAENVSMEFKNKDESSSNGRRELVFXXXXXXXXXXXXXXXXESEEPKRGTPDAKKKYAPVCVTMPTARICR 394
            ++AK P+AT  +R  L VV  + S    ++ +    K++SS+  RR+L+F                E EEPKRGT  AKKKYA VCVTMPTA+ICR
Sbjct:   13 AVAKVPSATGGRR--LSVVRASTSDNTPSLEV----KEQSSTTMRRDLMFTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102
The following BLAST results are available for this feature:
BLAST of FC873080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PST2_ARATH7.462e-1243.75Photosystem II 5 kDa protein, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CD06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873080 ID=FC873080; Name=FC873080; organism=Citrus clementina; type=EST; length=601bp
GTTAACTCAATTCACCCATTTTGTGTCAACAGAGAAATCACTTGCAACAA
AGTCAGCAGCAAACATGGCTTCGATGACCATGGCAGCAGCCTCATTACTG
CCCACAAGCATGGCCAAAAACCCAGCAGCAACAAGAGCGAAGAGAGGAGG
CCTCATCGTTGTGGCCAAGGCTGCATCATCAAAAGCTGAAAATGTGAGCA
TGGAATTCAAGAACAAGGATGAGAGCAGCAGCAACGGAAGAAGGGAGCTT
GTGTTTGCAGCAGCAGCTGCAGCAGCTTGCTCCATTGCAAAAGTTGCAAT
GGCTGAATCTGAGGAGCCCAAACGAGGGACCCCAGATGCTAAGAAGAAGT
ATGCTCCTGTTTGTGTCACAATGCCTACTGCTAGAATCTGTCGCAAGTGA
GAATGTTTTTTAATTTTCATGCTGTTGATGTTAATTAGTGTCCAATTAAT
TGATATGAGATCAATGTTAAAAGCTGTGAGCATCTGTATCTTGTAATTGG
AGAATCCTGTTTATTTTATCTTGTCTTTGTTACCCTTCCCTCCAATTTTT
GGTTTTCTATTAATTTCATTATATAGTATAAAAAAAAAAAAAAAAAAAAA
A
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