FC873082

Overview
NameFC873082
Unique NameFC873082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length423
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873082_ssr375 microsatellite FC873082_ssr375:375..390. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig840 contig Ccv1_Contig840:48..470. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873082 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.856e-16
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 2
Query:    2 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 115
            ALQYVQENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  234 ALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 271          
BLAST of FC873082 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.648e-16
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 2
Query:    2 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 115
            ALQY+QENPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  229 ALQYIQENPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 266          
BLAST of FC873082 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.704e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 2
Query:    2 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 115
            ALQYVQ+NPDEVCPAGWKPGDKSMKPDPK SKEYFAAI
Sbjct:  224 ALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYFAAI 261          
BLAST of FC873082 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.034e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 2
Query:    2 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 115
            ALQY   NPDEVCPAGWKPG+KSMKPDPKLSKEYF+AI
Sbjct:  229 ALQYTG-NPDEVCPAGWKPGEKSMKPDPKLSKEYFSAI 265          
BLAST of FC873082 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 2
Query:    2 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 115
            ALQYV++ PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct:  174 ALQYVKK-PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210          
BLAST of FC873082 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 2
Query:    2 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAAI 115
            ALQYV++ PDEVCPAGWKPG+KSMKPDPK SKEYFAAI
Sbjct:  174 ALQYVKK-PDEVCPAGWKPGEKSMKPDPKGSKEYFAAI 210          
BLAST of FC873082 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 2
Query:    2 ALQYVQENPDEVCPAGWKPGDKSMKPDPKLSKEYFAA 112
            A+QYVQ +PDEVCPA WKPGDK+M PDP  SK YFAA
Sbjct:  162 AIQYVQSHPDEVCPANWKPGDKTMNPDPIKSKNYFAA 198          
The following BLAST results are available for this feature:
BLAST of FC873082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BAS1B_ARATH5.856e-1694.742-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1A_ARATH7.648e-1692.112-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
BAS1_ORYSJ1.704e-1594.742-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1_SPIOL1.034e-1286.842-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1_WHEAT2.303e-1286.842-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_HORVU2.303e-1286.842-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
YCF42_PORYE4.343e-1175.68Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CD10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CD10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873082 ID=FC873082; Name=FC873082; organism=Citrus clementina; type=EST; length=423bp
GGCCTTGCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAGGAT
GGAAGCCCGGGGACAAATCCATGAAGCCAGACCCAAAACTCAGCAAGGAG
TACTTTGCAGCTATATAAGAGGGGTTAGCATTGGAACCTCGTATGCATAT
CTATGTCTATTAGGGAGGTGTAGATGAGTTTTGTTTTTCCATGTAATGTG
ATTTTGCTACTTACTGTTAGTTTTGCGGAGCAGCCTGTGGGGAATAAATG
CATTGGACTGGATTTGTCCATCTCTTTACTTCCTTTGTAATGCAGACACA
ACACAATCTCTTGTTATTGTCCTCTTCATGTTATCAATGTTACTGTGAAT
CGTATGTTGGCCAATTGGATGCAAAAATAAATAAATAAATAAACAAAATT
AAAAGAAAAAAAAAAAAAAAAAA
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