FC873097

Overview
NameFC873097
Unique NameFC873097
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length514
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL2_DROME (Dynein light chain 2, cytoplasmic OS=Drosophila melanogaster GN=Cdlc2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 42/85 (49.41%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA FIKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL2_RAT (Dynein light chain 2, cytoplasmic OS=Rattus norvegicus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL2_MOUSE (Dynein light chain 2, cytoplasmic OS=Mus musculus GN=Dynll2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL2_HUMAN (Dynein light chain 2, cytoplasmic OS=Homo sapiens GN=DYNLL2 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL2_BOVIN (Dynein light chain 2, cytoplasmic OS=Bos taurus GN=DYNLL2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEDMQQDAVDCATQAMEKYNIEK--DIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_DROME (Dynein light chain 1, cytoplasmic OS=Drosophila melanogaster GN=ctp PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.398e-14
Identity = 41/85 (48.24%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEEMQQDAVDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETRHFIYFYLGQVAILLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_ANTCR (Dynein light chain LC6, flagellar outer arm OS=Anthocidaris crassispina PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.603e-13
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA +IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +A+LLF+
Sbjct:    5 KAVIKNADMPEDMQQDAVDCATQALEKFNIEK--DIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_CAEEL (Dynein light chain 1, cytoplasmic OS=Caenorhabditis elegans GN=dlc-1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM + MQQ              + +  +IA +IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSDDMQQDAIDCATQALEKYNIEK--DIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_RAT (Dynein light chain 1, cytoplasmic OS=Rattus norvegicus GN=Dynll1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA  IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87
[Close]
BLAST of FC873097 vs. ExPASy Swiss-Prot
Match: DYL1_RABIT (Dynein light chain 1, cytoplasmic OS=Oryctolagus cuniculus GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3 
Query:    3 KAVIGETDMLETMQQXXXXXXXXXXXXXXVTEPTEIARFIKKEFDKAYGTGWQCIVGTDFGSFVTHCYGNFIYFRVGSLAILLFR 257
            KAVI   DM E MQQ              + +  +IA  IKKEFDK Y   W CIVG +FGS+VTH   +FIYF +G +AILLF+
Sbjct:    5 KAVIKNADMSEEMQQDSVECATQALEKYNIEK--DIAAHIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFK 87
The following BLAST results are available for this feature:
BLAST of FC873097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
DYL2_DROME4.219e-1449.41Dynein light chain 2, cytoplasmic OS=Drosophila me... [more]
DYL2_RAT9.398e-1448.24Dynein light chain 2, cytoplasmic OS=Rattus norveg... [more]
DYL2_MOUSE9.398e-1448.24Dynein light chain 2, cytoplasmic OS=Mus musculus ... [more]
DYL2_HUMAN9.398e-1448.24Dynein light chain 2, cytoplasmic OS=Homo sapiens ... [more]
DYL2_BOVIN9.398e-1448.24Dynein light chain 2, cytoplasmic OS=Bos taurus GN... [more]
DYL1_DROME9.398e-1448.24Dynein light chain 1, cytoplasmic OS=Drosophila me... [more]
DYL1_ANTCR1.603e-1347.06Dynein light chain LC6, flagellar outer arm OS=Ant... [more]
DYL1_CAEEL2.094e-1347.06Dynein light chain 1, cytoplasmic OS=Caenorhabditi... [more]
DYL1_RAT2.734e-1348.24Dynein light chain 1, cytoplasmic OS=Rattus norveg... [more]
DYL1_RABIT2.734e-1348.24Dynein light chain 1, cytoplasmic OS=Oryctolagus c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CF06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873097 ID=FC873097; Name=FC873097; organism=Citrus clementina; type=EST; length=514bp
GCAAAGCAGTGATTGGTGAGACTGACATGCTTGAAACCATGCAGCAAGAT
GCACTTGATTTGGCAGCAAAAGCGCTCGATTTCTTTGATGTCACCGAACC
CACCGAAATTGCACGCTTCATTAAAAAGGAATTTGATAAGGCGTATGGGA
CTGGATGGCAATGCATTGTGGGGACTGATTTTGGTTCCTTTGTCACACAT
TGTTATGGGAACTTCATCTACTTTCGTGTTGGTAGCCTTGCGATTTTGCT
CTTCAGGGGCTCTGCTGCTCCAGGGAGCGACGATGATGAAGCAAATCAGT
TTGCCAAATTAGCTGTAGAGACAGTACAAGCTTAATTAATGTTTTTGAAA
CTTCAGTATTGCAGCTTCCTTGGTCTCTCTTGTATCCTGTCTTAATTAGT
AGTGTAGACTAGAAAGACCAAGAAGTAAAAGAGCGAAAAAAATATATACG
TGTTTTTAGTTTAAATTATATATTCACCCGTTCAGTTTTGTACAGTAAAA
AAAAAAAAAAAAAA
back to top