FC873098

Overview
NameFC873098
Unique NameFC873098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10127 contig Ccv1_Contig10127:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 4.242e-55
Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 2
Query:  116 LGEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 484
            LGE MDLMTALQ+V++KS AH GL +GL E AK IEKHAAQLCVLAEDC+QPDYVKLVKALCA+HNV L+TVPSAKTLGEWAGLCKID+EGKARKVVGCSC+VVKD+GEES+GLN+VQQ++KS
Sbjct:   20 LGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYVKS 142          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.146e-50
Identity = 92/122 (75.41%), Postives = 109/122 (89.34%), Query Frame = 2
Query:  122 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKSH 487
            E MD+ TAL++ +RKS A+GG+ RGLHE AK+IEK  AQLCVLAEDCNQPDYVKLVKALCADH++ LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+V+KDFGEE+  LN+V++H+ S+
Sbjct:   23 EDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS121_ARATH (40S ribosomal protein S12-1 OS=Arabidopsis thaliana GN=RPS12A PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 95/121 (78.51%), Postives = 106/121 (87.60%), Query Frame = 2
Query:  122 EAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 484
            E MDLMTAL++ LRK+ A+GG+ RGLHE AK+IEK  AQL VLAEDCNQPDYVKLVKALCADH V LLTVPSAKTLGEWAGLCKIDSEG ARKVVGCSC+VVKDFGEE+  L++V +HI S
Sbjct:   23 EDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHIAS 143          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 2
Query:  119 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 481
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 2
Query:  119 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 481
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 2
Query:  119 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 481
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.371e-37
Identity = 72/121 (59.50%), Postives = 93/121 (76.86%), Query Frame = 2
Query:  119 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 481
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  119 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 481
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+  ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 71/121 (58.68%), Postives = 92/121 (76.03%), Query Frame = 2
Query:  119 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIK 481
            G  MD+ TALQ VL+ +L H GLARG+ E AK ++K  A LCVLA +C++P YVKLV+AL A+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ K
Sbjct:    9 GGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129          
BLAST of FC873098 vs. ExPASy Swiss-Prot
Match: RS12_ORENI (40S ribosomal protein S12 OS=Oreochromis niloticus GN=rps12 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.980e-36
Identity = 71/122 (58.20%), Postives = 92/122 (75.41%), Query Frame = 2
Query:  119 GEAMDLMTALQVVLRKSLAHGGLARGLHEGAKVIEKHAAQLCVLAEDCNQPDYVKLVKALCADHNVSLLTVPSAKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESDGLNVVQQHIKS 484
            G  MD+ TAL  VL+ +L H GLA G+ E AK ++K  A LCVLA +C++P YVKLV+ALCA+H ++L+ V   K LGEW GLCKID EGK RKVVGCSCVVVKD+G+ES   +V++++ KS
Sbjct:    9 GGVMDVNTALPEVLKTALIHDGLAPGIREAAKALDKRQAHLCVLAANCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKS 130          
The following BLAST results are available for this feature:
BLAST of FC873098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_HORVU4.242e-5582.1140S ribosomal protein S12 OS=Hordeum vulgare GN=RP... [more]
RS122_ARATH3.146e-5075.4140S ribosomal protein S12-2 OS=Arabidopsis thalian... [more]
RS121_ARATH2.039e-4978.5140S ribosomal protein S12-1 OS=Arabidopsis thalian... [more]
RS12_PIG1.371e-3759.5040S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P... [more]
RS12_HUMAN1.371e-3759.5040S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
RS12_CHICK1.371e-3759.5040S ribosomal protein S12 OS=Gallus gallus GN=RPS1... [more]
RS12_BOVIN1.371e-3759.5040S ribosomal protein S12 OS=Bos taurus GN=RPS12 P... [more]
RS12_XENLA1.980e-3658.6840S ribosomal protein S12 OS=Xenopus laevis GN=rps... [more]
RS12_RAT1.980e-3658.6840S ribosomal protein S12 OS=Rattus norvegicus GN=... [more]
RS12_ORENI1.980e-3658.2040S ribosomal protein S12 OS=Oreochromis niloticus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873098 ID=FC873098; Name=FC873098; organism=Citrus clementina; type=EST; length=698bp
CCAGTCGCAGGCCAACGTGCGCTCTCCGCTAAGAGTAAATATTTGAACAA
ACAACAAGAAGACAATGTCAGGTGATGAGGCTGCCCCTGCTGTTGAGACA
GCACCTCCTGCCCCCCTTGGTGAGGCAATGGATCTGATGACGGCTTTGCA
GGTTGTGTTGAGAAAATCACTTGCTCATGGTGGTCTTGCTCGTGGCCTTC
ATGAAGGTGCCAAAGTGATTGAAAAGCATGCTGCCCAGCTCTGTGTATTG
GCTGAGGATTGTAACCAACCTGACTATGTGAAATTGGTCAAGGCACTCTG
TGCTGACCATAACGTAAGCTTGTTGACGGTTCCCAGTGCCAAGACCCTCG
GCGAGTGGGCTGGTTTGTGCAAGATTGACTCAGAGGGAAAGGCCAGGAAG
GTTGTGGGTTGTTCCTGTGTTGTTGTGAAGGATTTCGGAGAGGAAAGCGA
TGGTCTTAACGTTGTTCAGCAGCACATCAAGTCTCACTGAGTAGCAGTGA
TGGATTCGTAGTTCAACTTTTATATTTATAGAGAGGGCCTTGTCTTTTTT
CTGTCAAATTGTGTTTGGTTGTCTCACTCCAAGGAGATTTTGTGTTCGTT
AGTTGCTATTACTTTTAGTACTTTTGTTCCTCCTTAATCCTTTATTGCAA
CTGAAAACATCAATCCTTTTCTATAAAAAAAAAAAAAAAAAAAAAAAA
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