FC873100

Overview
NameFC873100
Unique NameFC873100
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:64..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.416e-40
Identity = 74/122 (60.66%), Postives = 97/122 (79.51%), Query Frame = 1
Query:  286 RQKYCESIHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            ++KYCE+IH+T RR T+ V VGNV IG  HPIR+Q+MTT+ T+DV  T+E+V+R+ADQG ++VR+TVQG +EADAC  IK  L+++ Y IPLVADIHF P  A+RV D  DK+R+NPGNF D
Sbjct:    3 QKKYCEAIHQTERRPTRIVNVGNVGIGGNHPIRIQSMTTSSTRDVEATIEQVIRLADQGCEIVRVTVQGIKEADACEHIKKGLIKRGYQIPLVADIHFYPPAAMRVVDFVDKVRINPGNFVD 124          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis GN=ispG PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  307 IHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V DC DK+R+NPGN+ D
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVD 120          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=ispG PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  307 IHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V DC DK+R+NPGN+ D
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVD 120          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=ispG PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  307 IHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V DC DK+R+NPGN+ D
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVD 120          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLT2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=ispG PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.898e-31
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  307 IHKTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            I    RRKT  V +G++ +GSEH I++Q+MTT  T DV GTV ++  + + G D+VR+TVQG RE  AC  IK+ L+Q+N +IPLVADIHF P  A+ V DC DK+R+NPGN+ D
Sbjct:    6 IQNAFRRKTLPVRIGDLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQELGCDIVRVTVQGLREVHACEHIKDRLIQQNISIPLVADIHFFPQAAIHVVDCVDKVRINPGNYVD 120          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 61/110 (55.45%), Postives = 82/110 (74.55%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            RRKT +V VGN+ +GSEH I++Q+MTT  T DV GTV ++  + + G ++VR+TVQG +E  AC +IK+ LVQ+N  IPLVADIHF P  A+ VAD  DK+R+NPGN+ D
Sbjct:   11 RRKTLSVKVGNLFVGSEHSIKIQSMTTTATTDVEGTVRQIYALQECGCEIVRVTVQGLKEVGACEQIKDRLVQQNVTIPLVADIHFFPQAAIHVADFVDKVRINPGNYVD 120          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  322 RRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            RRKT TV +GN+ IGS+H I+ Q+MTT  T D+  TVE++  +A+   D+VR+TVQG +EA AC +IK  L+    NIPLVADIHF P  A+ VAD  DK+R+NPGN+ D
Sbjct:   12 RRKTHTVRIGNLYIGSDHSIKTQSMTTTLTTDIDSTVEQIYALAEHNCDIVRVTVQGIKEAQACEKIKERLIALGLNIPLVADIHFFPQAAMLVADFADKVRINPGNYID 121          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=ispG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.331e-27
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 1
Query:  313 KTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            +T RR T +V +G++ +GSEH I++Q+MTT  T DV  TV ++  + +   D+ R+TVQG +EA AC  IK  L+    +IPLVADIHF P  A+ VAD  DK+R+NPGNF D
Sbjct:    9 QTARRYTHSVKIGSLFVGSEHSIKMQSMTTTPTSDVDATVAQICSLVEAKCDIARVTVQGVKEAQACEHIKERLLTMGLDIPLVADIHFFPQAAMHVADFVDKVRINPGNFVD 121          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.149e-26
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  313 KTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            +  RR T +V +GN+ +GSEH I++Q+MTT  T DV  TV ++  + +   ++ R+TVQG +EA AC  IK  L+     IPLVADIHF P  A+ VAD  DK+R+NPGNF D
Sbjct:    9 QAARRHTHSVKIGNLYVGSEHSIKMQSMTTTPTADVEATVTQICALVEAKCEIARVTVQGIKEAQACEHIKERLLSMGIAIPLVADIHFFPQAAMHVADFVDKVRINPGNFVD 121          
BLAST of FC873100 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  313 KTVRRKTQTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADQGADLVRITVQGKREADACFEIKNTLVQKNYNIPLVADIHFAPSVALRVADCFDKIRVNPGNFAD 651
            +  RR T +V +GN+ +GS+H I+ Q+MTT  T DV  TV ++  + +   ++ R+TVQG +EA AC  IK  L+    ++PLVADIHF P  A+ VAD  DK+R+NPGNF D
Sbjct:    9 QAARRYTHSVKIGNLYVGSDHSIKTQSMTTTPTADVDATVAQICALVEARCEIARVTVQGIKEAQACEHIKERLIALGIDVPLVADIHFFPQAAMHVADFVDKVRINPGNFVD 121          
The following BLAST results are available for this feature:
BLAST of FC873100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 424
Match NameE-valueIdentityDescription
ISPG_PARUW3.416e-4060.664-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTR2.898e-3153.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTB2.898e-3153.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTA2.898e-3153.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLT22.898e-3153.044-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU1.879e-3055.454-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN3.543e-2954.554-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLFF4.331e-2749.564-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV2.149e-2648.674-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLAB6.254e-2646.904-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CF11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873100 ID=FC873100; Name=FC873100; organism=Citrus clementina; type=EST; length=652bp
CACATTTCTCTCTCATAGTTAGTTCTCACTTCTCAACATTATAAAAGGTA
AGCGTATTATTTTGCAAAGATGGAGACTGGAACCCTGCCCGCTTCGTTTC
CGGGCCTAAAGAGCAAAGACTCGGGCTTGGGGTTTGCGAAAAGTGTGGAT
TTTGTGAGAGTTTGTGATTTCAGAAAGTTCAAGTCTGGCAGAATAAGATT
CACTGTGATAAGGAATTCATCAAATTCCAGTTCGGATATCGCTGAGCTTC
AGCCTGCATCAGAAAGAAGCCCCCTATTAATTCCAAGACAAAAGTATTGT
GAATCCATTCACAAAACTGTCAGAAGGAAGACACAGACGGTGATGGTGGG
AAATGTAGCCATTGGCAGTGAGCATCCTATTAGAGTTCAAACAATGACTA
CAAATGACACTAAGGATGTTGCTGGAACAGTGGAAGAGGTAATGAGAATA
GCAGACCAGGGAGCAGATCTTGTTCGGATCACAGTTCAAGGGAAGAGAGA
GGCAGATGCATGTTTTGAGATAAAAAACACACTTGTCCAGAAAAACTACA
ATATACCTCTGGTGGCAGATATTCATTTTGCCCCTTCTGTTGCTCTACGA
GTTGCTGACTGCTTTGACAAAATCCGTGTCAACCCAGGAAATTTTGCTGA
TA
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