FC873102

Overview
NameFC873102
Unique NameFC873102
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10119 contig Ccv1_Contig10119:1..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873102 vs. ExPASy Swiss-Prot
Match: SMD3_XENLA (Small nuclear ribonucleoprotein Sm D3 OS=Xenopus laevis GN=snrpd3 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 54/94 (57.45%), Postives = 76/94 (80.85%), Query Frame = 3
Query:   75 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 356
            S+G+P+K+LHEA GH+VT E  +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +  + +G  +
Sbjct:    2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95          
BLAST of FC873102 vs. ExPASy Swiss-Prot
Match: SMD3_MOUSE (Small nuclear ribonucleoprotein Sm D3 OS=Mus musculus GN=Snrpd3 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 54/94 (57.45%), Postives = 76/94 (80.85%), Query Frame = 3
Query:   75 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 356
            S+G+P+K+LHEA GH+VT E  +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +  + +G  +
Sbjct:    2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95          
BLAST of FC873102 vs. ExPASy Swiss-Prot
Match: SMD3_HUMAN (Small nuclear ribonucleoprotein Sm D3 OS=Homo sapiens GN=SNRPD3 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.491e-29
Identity = 54/94 (57.45%), Postives = 76/94 (80.85%), Query Frame = 3
Query:   75 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSS 356
            S+G+P+K+LHEA GH+VT E  +GE+YRG ++E EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K +  + +G  +
Sbjct:    2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGA 95          
BLAST of FC873102 vs. ExPASy Swiss-Prot
Match: SMD3_DROME (Small nuclear ribonucleoprotein Sm D3 OS=Drosophila melanogaster GN=SmD3 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.785e-27
Identity = 50/84 (59.52%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   75 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKR 326
            S+G+P+K+LHEA GH++T E  +GE+YRG ++E EDN NCQ+  IT T +DG+ + LE+V+IRGSK+RF+++PDMLKNAPMFK+
Sbjct:    2 SIGVPIKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGSKIRFLILPDMLKNAPMFKK 85          
BLAST of FC873102 vs. ExPASy Swiss-Prot
Match: SMD3_CAEEL (Small nuclear ribonucleoprotein Sm D3 OS=Caenorhabditis elegans GN=snr-1 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.784e-27
Identity = 53/91 (58.24%), Postives = 71/91 (78.02%), Query Frame = 3
Query:   75 SLGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKG 347
            S+G+P+K+LHEA GH+VT+E  +GE+YRG + E EDN NCQL     T +DG+  QL++VFIRG+K+RFM++PDMLKNAPMFK +    KG
Sbjct:    3 SVGVPIKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPDMLKNAPMFKNIGRAQKG 93          
BLAST of FC873102 vs. ExPASy Swiss-Prot
Match: SMD3_SCHPO (Probable small nuclear ribonucleoprotein Sm D3 OS=Schizosaccharomyces pombe GN=smd3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 47/82 (57.32%), Postives = 68/82 (82.93%), Query Frame = 3
Query:   78 LGIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFK 323
            + + +KLLHE  GH+VT+EL++G  YRG ++E EDN NCQ+ +I+ TA+DG+VS L+ V+IRGS +RF+++PDML+NAPMFK
Sbjct:    1 MSLCIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGSHIRFLIVPDMLRNAPMFK 82          
BLAST of FC873102 vs. ExPASy Swiss-Prot
Match: SMD3_YEAST (Small nuclear ribonucleoprotein Sm D3 OS=Saccharomyces cerevisiae GN=SMD3 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 44/86 (51.16%), Postives = 67/86 (77.91%), Query Frame = 3
Query:   81 GIPVKLLHEASGHVVTVELKSGELYRGSMVECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAR 338
            GIPVKLL+EA GH+V++EL +G  YRG +VE ED+ N QL ++  T   G V+ ++ +F+RGS+++F+V+PD+LKNAP+FK+  +R
Sbjct:    5 GIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGSQIKFIVVPDLLKNAPLFKKNSSR 90          
The following BLAST results are available for this feature:
BLAST of FC873102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SMD3_XENLA2.491e-2957.45Small nuclear ribonucleoprotein Sm D3 OS=Xenopus l... [more]
SMD3_MOUSE2.491e-2957.45Small nuclear ribonucleoprotein Sm D3 OS=Mus muscu... [more]
SMD3_HUMAN2.491e-2957.45Small nuclear ribonucleoprotein Sm D3 OS=Homo sapi... [more]
SMD3_DROME1.785e-2759.52Small nuclear ribonucleoprotein Sm D3 OS=Drosophil... [more]
SMD3_CAEEL6.784e-2758.24Small nuclear ribonucleoprotein Sm D3 OS=Caenorhab... [more]
SMD3_SCHPO3.723e-2557.32Probable small nuclear ribonucleoprotein Sm D3 OS=... [more]
SMD3_YEAST1.121e-2151.16Small nuclear ribonucleoprotein Sm D3 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873102 ID=FC873102; Name=FC873102; organism=Citrus clementina; type=EST; length=727bp
GATTAGGGTTTTACTTTTACTTGCACACAGCATTTGTGAGGCACAGAGAG
AAAAGAAGAGAAGCCATGAGCAGAAGCTTGGGCATACCAGTGAAGTTACT
TCACGAGGCCTCGGGGCACGTGGTAACCGTCGAGCTCAAGAGCGGAGAGC
TCTATCGAGGAAGCATGGTAGAATGTGAAGATAACTGGAATTGCCAGCTC
GAGAACATCACTTACACTGCTAAGGATGGAAAGGTCTCTCAGCTTGAGCA
TGTGTTCATTAGGGGCAGCAAAGTCAGGTTTATGGTCATACCAGACATGT
TGAAGAATGCTCCAATGTTCAAACGTCTCGATGCTAGAATCAAGGGTAAA
AGCTCATCGATTGGAGTTGGCCGGGGTAGAGCTGTTGCTATGCGGGCTAA
AGCTGCAGCAGCTGGGCGTGGAGCAGCACCTGGCAGGGGCGTTGTGCCGC
CTGTTCGAAGGTAGTCATCCGCTTTTTGGAAGAATGGTTGCTAATCTCCT
TGGTCCTGGATCATTGCTTAGTTTACTGTAGTTCATGCCTTCAGTTGAAA
ATTCCTGCCATTGTGACCCTCAAGCTCCATGTAAAAGGATGATTATTATT
CTAGCTTAAGTTGTTACAAATAGGGTGGGGAATGTTACCTGGACTTGCAT
TTTTGTAGTAATGTATTGAATTTGAATATTACTAACATGTGATATTTCTA
TAAAAAAAAAAAAAAAAAAAAAAAAAA
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