FC873113

Overview
NameFC873113
Unique NameFC873113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9269 contig Ccv1_Contig9269:327..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.180e-78
Identity = 141/172 (81.98%), Postives = 148/172 (86.05%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQLS 547
            MPNP+VFFDM+VGGQPAG I MELFAD TPRTAENFRALCTGEKG G+SGKPLHYK SSFHRVIPGFMCQ            ESIYG+KFADENF+KKHTGPGILSM NAGP TNGSQFF+CTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRT K   + DCGQLS
Sbjct:    1 MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 5.482e-76
Identity = 134/171 (78.36%), Postives = 145/171 (84.80%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            M NPKVFFD+T+GG PAG + MELFAD TP+TAENFRALCTGEKG+GK GKPLHYKGS+FHRVIPGFMCQ            ESIYG+KF DENFVKKHTGPGILSM NAGPGTNGSQFF+CTAKTEWL+GKHVVFGQVVEGMDV+K  E VGSSSGR +KP  IADCGQL
Sbjct:    1 MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 5.131e-74
Identity = 129/172 (75.00%), Postives = 145/172 (84.30%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQLS 547
            M NPKVFFDM + G PAG I MEL+AD TPRTAENFRALCTGEKG+G+SGKPLHYKGS+FHRVIP FMCQ            ESIYG+KFADENF+K+HTGPGILSM NAG GTNGSQFF+CT KTEWLDGKHVVFG+V+EGM+VV+ IEKVGS SG+T++P  IADCGQLS
Sbjct:    1 MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.156e-72
Identity = 130/170 (76.47%), Postives = 141/170 (82.94%), Query Frame = 2
Query:   38 NPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQLS 547
            NPKV+FDMTVGG+ AG I MEL+AD TP TAENFRALCTGE+GIGK GKPLHYKGSSFHRVIP FMCQ            ESIYGSKF DENF+KKHTGPGILSM NAG  TNGSQFF+CT KT WLDGKHVVFGQVVEG++VV+ IEKVGS SGRT+KP  IADCGQ+S
Sbjct:    4 NPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.273e-72
Identity = 126/170 (74.12%), Postives = 142/170 (83.53%), Query Frame = 2
Query:   38 NPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQLS 547
            +PKVFFDMT+GG PAG I MEL+ D TP+TAENFRALCTGEKG+G+SGKPLH+KGSSFHRVIP FMCQ            ESIYG+KF DENF +KHTGPGILSM NAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEK+GSSSG+  KP  IADCG++S
Sbjct:    4 HPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 1.825e-71
Identity = 128/172 (74.42%), Postives = 140/172 (81.40%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQLS 547
            M  PKV+FDMT+ GQPAG I MEL+ D TPRTAENFRALCTGEKG+G +GKPLH+KGS FHRVIP FMCQ            ESIYGSKF DENF +KHTGPGILSM NAG  TNGSQFF+CT KT+WLDGKHVVFGQVVEG+DVVKAIEKVGSSSG+  KP  +ADCGQLS
Sbjct:    1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 2.635e-70
Identity = 126/172 (73.26%), Postives = 139/172 (80.81%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQLS 547
            M NP+VFFDM++ G P G I MELFAD TP TAENFRALCTGEKG+GK GKPLH+KGS FHRVIPGFMCQ            ESIYG+KF DENF+KKHTG GILSM N+GP TNGSQFF+CT KT WLDGKHVVFGQVV+G+DVVKAIEKVGS SG+T+K   I DCGQLS
Sbjct:    1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 263.077 bits (671), Expect = 7.668e-70
Identity = 128/171 (74.85%), Postives = 136/171 (79.53%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            M NPKV+FDMTVG + AG I MEL+AD  P TAENFRALCTGE+GIGKSGKPLHYKGS+FHRVIP FMCQ            ESIYG KF DENFVKKHTGPGILSM NAG  TNGSQFF+CT KT WLDGKHVVFGQVVEGMDVV+ IEKVGS SGRT+K     DCGQL
Sbjct:    1 MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 8.478e-69
Identity = 124/172 (72.09%), Postives = 137/172 (79.65%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQLS 547
            M NP+VFFDMTVGG PAG I MEL+A+  P+TAENFRALCTGEKG+GKSGKPLHYKGS+FHRVIP FMCQ            ESIYG KF DE FV+K   PG+LSM NAGP TNGSQFF+CT  T WLDGKHVVFGQVVEGMDVVKAIEKVG+ +G T+K   +ADCGQLS
Sbjct:    1 MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of FC873113 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 1.655e-64
Identity = 117/171 (68.42%), Postives = 132/171 (77.19%), Query Frame = 2
Query:   32 MPNPKVFFDMTVGGQPAGTIGMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMENAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPGGIADCGQL 544
            M NPKVFFD+ +G   AG + MELFADVTPRTA NFRALCTGE GIGK+GK LHYKGS+FHR+IPGFMCQ            ESIYGSKF DENF  KHTGPGILSM N+GP TNGSQFF+CT KT WLDGKHVVFG+VV+G +VVKA+E VGS  G  ++   I DCG+L
Sbjct:    1 MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
The following BLAST results are available for this feature:
BLAST of FC873113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
CYPH_CATRO1.180e-7881.98Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_SOLLC5.482e-7678.36Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_LUPLU5.131e-7475.00Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH2.156e-7276.47Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19B_ARATH6.273e-7274.12Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18C_ARATH1.825e-7174.42Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP18D_ARATH2.635e-7073.26Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_BRANA7.668e-7074.85Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CYPH_MAIZE8.478e-6972.09Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CP19C_ARATH1.655e-6468.42Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2CH01FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873113 ID=FC873113; Name=FC873113; organism=Citrus clementina; type=EST; length=595bp
TTGTTTTTTTCTTTTAACCAACCCATCAAAAATGCCAAACCCCAAAGTGT
TCTTCGACATGACCGTCGGCGGTCAGCCCGCCGGCACGATCGGGATGGAG
CTCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTG
CACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGG
GCTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGAC
TTCACCGCCGGAAACGGAACCGGAGGCGAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGAGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGGCGGGATCGCTGATTGCGGTCAATTGTCTTAG
ATTTGATCATGATAATGATCGCCATCATCACGAGCCGACTGATCG
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