FC873117

Overview
NameFC873117
Unique NameFC873117
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length228
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1187 contig Ccv1_Contig1187:1..228. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873117 vs. ExPASy Swiss-Prot
Match: NUD15_ARATH (Nudix hydrolase 15, mitochondrial OS=Arabidopsis thaliana GN=NUDT15 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.575e-22
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 2
Query:    2 MFLTDENRRVEEKEWMGEKYLLHYFNYERKNKKYLIWGITAAVLVRAASGVYQKPPAFEEGNPSFKFRK 208
            MFL DENRR EE+EWMGEKYL+HYF+Y   +K Y+IWG+TA +L+RAAS  Y++PPAF E  P FK+ K
Sbjct:  216 MFLKDENRRSEEREWMGEKYLIHYFDYRTGDKDYMIWGLTAGILIRAASVTYERPPAFIEQCPKFKYPK 284          
BLAST of FC873117 vs. ExPASy Swiss-Prot
Match: NUD22_ARATH (Nudix hydrolase 22, chloroplastic OS=Arabidopsis thaliana GN=NUDT22 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 41/72 (56.94%), Postives = 56/72 (77.78%), Query Frame = 2
Query:    2 MFLTDENRRVEEKEWMGEKYLLHYFNYERKNKKYLIWGITAAVLVRAASGVYQKPPAFEEGNPSFKFRKDRQ 217
            MFL DENRR EE +WMGEK+L+H+F+Y+  +  Y+IWG+TA +L+RAA+ VYQ+PPAF E  P+ K+ K  Q
Sbjct:  190 MFLKDENRRSEEFDWMGEKHLVHFFDYKTGDSDYVIWGLTARILIRAATVVYQRPPAFIEQKPNLKYSKMNQ 261          
BLAST of FC873117 vs. ExPASy Swiss-Prot
Match: NUD11_ARATH (Nudix hydrolase 11 OS=Arabidopsis thaliana GN=NUDT11 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 37/67 (55.22%), Postives = 48/67 (71.64%), Query Frame = 2
Query:    2 MFLTDENRRVEEKEWMGEKYLLHYFNY--ERKNKKYLIWGITAAVLVRAASGVYQKPPAFEEGNPSF 196
            MFL D NRR EE+E  GE+YLL YF+Y  E K + ++IW +TA +L+R AS VYQ+ P F+E  PSF
Sbjct:  151 MFLKDRNRRAEEREHEGERYLLQYFDYYSEDKERSFIIWALTAGILIRVASIVYQRLPEFQERKPSF 217          
The following BLAST results are available for this feature:
BLAST of FC873117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NUD15_ARATH9.575e-2263.77Nudix hydrolase 15, mitochondrial OS=Arabidopsis t... [more]
NUD22_ARATH1.529e-1956.94Nudix hydrolase 22, chloroplastic OS=Arabidopsis t... [more]
NUD11_ARATH6.646e-1555.22Nudix hydrolase 11 OS=Arabidopsis thaliana GN=NUDT... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CH07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873117 ID=FC873117; Name=FC873117; organism=Citrus clementina; type=EST; length=228bp
AATGTTTCTTACTGATGAAAATAGAAGAGTTGAGGAGAAAGAATGGATGG
GAGAGAAGTATCTACTGCACTACTTCAATTATGAACGAAAGAACAAGAAG
TATCTGATATGGGGTATTACTGCTGCCGTTTTAGTTAGGGCCGCATCAGG
GGTGTACCAAAAGCCACCAGCTTTTGAGGAGGGGAACCCTAGCTTCAAGT
TTCGTAAAGATCGTCAGAGACAGCCTTT
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