FC873118

Overview
NameFC873118
Unique NameFC873118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length856
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14357 contig Ccv1_Contig14357:66..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 2.658e-71
Identity = 134/265 (50.57%), Postives = 183/265 (69.06%), Query Frame = 2
Query:   59 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEGEH*ALEKT 853
            M KGPGL+ DIGKKA+DLL KDY++D+K +ISTYS  GVA+TS+  KKG L  GDV  Q K KN+  D+KVDT SN+ TT T+ E  P  KAI S KVP+  SGK+E+QY H++A  +S++ L  +P ++ ++ IGT ++AFGA+  +DT  G  TK  A ++  K D   S+ L +KGD + ASY H ++ L  +A   +I+ RFST ENTFT+G  +A+D LT VK ++ N GK  AL+QHE  PKSL+TISSE +  A+EK+
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKS 265          
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 261.151 bits (666), Expect = 5.543e-69
Identity = 129/265 (48.68%), Postives = 179/265 (67.55%), Query Frame = 2
Query:   59 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEGEH*ALEKT 853
            M KGPGL++DIGKKA+DLL +DY +D K +++TYS  GVA+T++ +KKG L   DV+ Q K KN+  DVKVDT SN+ TT T+ E  P  K I S  VPD  SGK+E+QY H++A   ++I L  SP ++ +   G  ++A G +  +DT +GNFTK  AG+S +  D  AS+ L DKGDT+ ASY H +  +  +A   E+T  FS+NENT T+G  + +D LT VKA++N++GK  AL+QHE  PKSL TIS E +  A+EK+
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKS 265          
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 7.239e-69
Identity = 132/264 (50.00%), Postives = 172/264 (65.15%), Query Frame = 2
Query:   59 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEGEH*ALEK 850
            M KGPGL+ +IGKKA+DLL KDY +D K SI+TYS  GV +TS+  KKG L   DV  Q K KNV  D+KVDT SN+ TT T+ E  P  K I S +VPD  SGKLEVQY HD+A   +++ L  +P ++ +  +GT  IA G +  +DT +G+FTK  AG+S T  D  AS+ L +KGD + ASY H +  L  +A   E+   FSTNEN  TVG  + +D LT VKA++NN GK  ALLQHE  PKSL T+S E +  +++K
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDK 264          
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 253.062 bits (645), Expect = 1.509e-66
Identity = 127/265 (47.92%), Postives = 183/265 (69.06%), Query Frame = 2
Query:   59 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEGEH*ALEKT 853
            M KGPGL+ +IGKKA+DLL KD+N+DQK SI+T+S AGVA+TST  KKG L  GDVA Q + KN+  D+KV T+S  L T T+ E  P  ++I S KVPD NSGK+E+QY H++A  ++++ L Q+P ++ +  IG+  +A G +  +DT SGNFTK  AG+S TK D  AS+ + DKGD + ASY H ++ L  +A   E++ + S+ ++T TVG  +++D LT VKA++N+ G   AL+QHE  PKS  TIS E +  +++K+
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKS 265          
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 1.278e-65
Identity = 123/262 (46.95%), Postives = 181/262 (69.08%), Query Frame = 2
Query:   68 GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEGEH*ALEKT 853
            GPGL+ +IGKKA+DLL +DY  D K +++TY+  GVA+T+T+ KK  L  G++ +Q K KN+  DVK +++SN++TT T+ E+ P  K+I S  VPD  SGK E+QY HD+A  +++I L  SP +++++  GT ++A GA+   DT +GN TKY AG+S +  D  AS+ L +KGD++ ASY +H+ N   +A   E+T  FS+NEN+ T G  + +D LTVVKA+ NN GK  ALLQHE  PKS+ TIS+E +  A++K+
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASY-YHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKS 263          
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 2.847e-65
Identity = 126/266 (47.37%), Postives = 171/266 (64.29%), Query Frame = 2
Query:   59 MSKGPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEILPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVG-EITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEGEH*ALEKT 853
            M KGPGL+ +IGKKA+DLL +DY  DQK S++TYS  GVA+T+T   KG L  GDVA Q K  N   DVKV T+S++LTT T  E  P  K I   K+PD+ SGK EVQYFHD+A  ++++    +P ++ +  +GT  ++ G +  Y+T SGNF  + AG + TK D  AS+IL DKG+ + ASY      +  S  VG EI+  F+T EN  TVG  +A+D LT VKA++NN G   AL+QHE  PKS  T+S E +  A++K+
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASY---YQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKS 263          
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.562e-63
Identity = 122/264 (46.21%), Postives = 178/264 (67.42%), Query Frame = 2
Query:   68 GPGLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEIL-PSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVG-EITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEGEH*ALEKT 853
            GPGL++ IGKKAKDLL +DY  D K +++TY+  G A+T+T+ KK  L+ G++ +Q K KN+  DVK ++ SN++TT T  ++  P  K I S  VPD  SGK+E+QY HD+A   ++I L  +P ++++   GT ++A GA+   DT + NF KY A +S T  D  AS+ L +KGD++ ASY H ++  K   AVG E+T  FS+NEN+ T G  + +D LT+VKA++NN GK  AL+QHE +PKSL TIS+E +  A+EK+
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVE--KSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKS 264          
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.015e-54
Identity = 107/261 (41.00%), Postives = 164/261 (62.84%), Query Frame = 2
Query:   74 GLFADIGKKAKDLLTKDYNADQKISISTYSGAGVALTSTAVKKGGLSAGDVAAQYKYKNVLFDVKVDTESNILTTFTLTEI-LPSTKAIASLKVPDYNSGKLEVQYFHDHATFTSAIALNQSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISSEGEH*ALEKT 853
            GL+ DIGKK +DLL KDYN  QK  ++T S  GVA+T+   +K     G++  Q K K +  DVK ++ES++LTT T+ E   P  K+I +L VPD  SGKLE QY H++A   +++ LN +P ++++   G+ +++ G +  +DT + +FTKY A +S+T PD  AS+ L + GDT+ ASY H + N   +A   E++   S NE+T   G  +++D  T +K + NN+G   AL+QHE  PKS +TIS + +  A+EK+
Sbjct:    6 GLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKS 266          
BLAST of FC873118 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 57/266 (21.43%), Postives = 117/266 (43.98%), Query Frame = 2
Query:   71 PGLFADIGKKAKDLLTKDYNAD-QKISISTYSGAGVALTST--AVKKGGLSAGDVAAQYKYKN--VLFDVKVDTESNILTTFTLTEILPSTKAIASLKV---------PDYNSGKLEVQYFHDHATFTSAIALN-QSPCIDVTATIGTPSIAFGAEAGYDTTSGNFTKYTAGISVTKPDSCASIILGDKGDTIRASYVHHLDNLKKSAAVGEITRRFSTNENTFTVGGSYAVDHLTVVKAKLNNHGKLGALLQHEVIPKSLLTISS 823
            P  ++D+GK+A+D+ +K YN    K+ + T + +G+   +   + ++ G   G +  +YK K+  +    K +T++ +      TE+    + +  LK+             +GK +V Y H++    S + ++ + P I+ +A +G      G +  +DT     T     +  T  D      + D  +   + +    D L       +++    T+   F +G  Y +D    V+AK+NN  ++G   Q ++     LT+S+
Sbjct:    3 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKDYGLTLTEKWNTDNTL-----FTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVNDGQEFSGSIFQRTSDKLDVGV---QLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTLTLST 260          
The following BLAST results are available for this feature:
BLAST of FC873118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
VDAC_PEA2.658e-7150.57Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC2_SOLTU5.543e-6948.68Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU7.239e-6950.00Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_ARATH1.509e-6647.92Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ1.278e-6546.95Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC2_ARATH2.847e-6547.37Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_WHEAT1.562e-6346.21Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE1.015e-5441.00Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC_DROME4.037e-1121.43Voltage-dependent anion-selective channel OS=Droso... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CH08FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873118 ID=FC873118; Name=FC873118; organism=Citrus clementina; type=EST; length=856bp
TCTGGCTCTCCCAAACTTCGCACAGATCCTTCACTTTCGTCTCTCTCACT
AGTCAACCATGAGTAAGGGACCGGGGCTCTTCGCCGACATCGGTAAAAAA
GCCAAAGATCTTTTGACGAAGGACTACAACGCCGATCAGAAAATCAGTAT
CTCCACTTACAGCGGTGCCGGAGTGGCTCTCACATCAACTGCTGTGAAAA
AGGGAGGACTCTCTGCTGGTGATGTTGCTGCACAGTACAAGTATAAGAAT
GTTTTATTCGATGTCAAAGTGGACACAGAGTCTAATATTTTGACAACCTT
CACTCTTACTGAGATCCTTCCATCAACAAAGGCTATTGCTTCCTTGAAAG
TGCCTGATTATAACTCTGGCAAGTTGGAGGTTCAGTACTTCCATGATCAT
GCCACCTTTACTTCAGCCATTGCTTTGAATCAATCCCCTTGCATTGATGT
TACAGCCACCATTGGTACCCCGAGCATTGCTTTTGGTGCTGAGGCTGGGT
ATGATACCACATCTGGTAATTTTACAAAGTACACAGCCGGCATTAGTGTG
ACCAAACCAGATTCATGTGCTTCAATAATTCTGGGTGACAAGGGAGACAC
AATTAGAGCATCATACGTACATCATCTGGACAACTTGAAGAAGAGTGCTG
CTGTGGGAGAGATCACCAGAAGGTTTTCAACAAATGAGAATACTTTTACA
GTTGGAGGATCATATGCTGTTGATCACCTCACAGTAGTGAAGGCAAAGCT
CAACAACCATGGAAAGCTTGGTGCGCTGCTGCAGCATGAGGTTATTCCAA
AATCATTGCTTACGATTTCTAGTGAGGGTGAACACTAAGCGTTGGAGAAA
ACTCCT
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