FC873120

Overview
NameFC873120
Unique NameFC873120
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873120_ssr188 microsatellite FC873120_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10130 contig Ccv1_Contig10130:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873120 vs. ExPASy Swiss-Prot
Match: SDR2_ARATH (Short-chain dehydrogenase/reductase 2 OS=Arabidopsis thaliana GN=SDR2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.680e-43
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = -2
Query:  482 LTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 667
            +T+TYELAE+CI+ NYYG KRMCEA IPLLQLSDSPRI+N SS MG++KN+ NEWAKG+LSD
Sbjct:  122 ITETYELAEECIKINYYGPKRMCEAFIPLLQLSDSPRIINVSSFMGQVKNLVNEWAKGILSD 183          

HSP 2 Score: 91.6633 bits (226), Expect = 1.680e-43
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = -1
Query:  219 LDEVPKEYLNDFTPETQD--------AAYVISKAATNAYTRILAKKFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLP-KGGPSKCVF 482
            +D+V  + LND   +T          +AYV+SKA  NAYTRILAKK  +I +NS+CPG+VKTD+N   G+L+VEEGA S V L LLP +  PS C F
Sbjct:  192 IDQVINQLLNDLKEDTAKTKYWAKVMSAYVVSKAGLNAYTRILAKKHPEIRVNSVCPGFVKTDMNFKTGILSVEEGASSPVRLALLPHQESPSGCFF 288          
BLAST of FC873120 vs. ExPASy Swiss-Prot
Match: SDR1_ARATH ((+)-neomenthol dehydrogenase OS=Arabidopsis thaliana GN=SDR1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.072e-42
Identity = 48/63 (76.19%), Postives = 57/63 (90.48%), Query Frame = -2
Query:  482 MLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 670
            ++T+TYEL E+CI+ NYYG KRMCEA IPLL+LSDSPRIVN SSSMG+LKN+ NEWAKG+LSD
Sbjct:  121 IITETYELTEECIKINYYGPKRMCEAFIPLLKLSDSPRIVNVSSSMGQLKNVLNEWAKGILSD 183          

HSP 2 Score: 87.8113 bits (216), Expect = 1.072e-42
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = -1
Query:  219 E*LDEVPKEYLNDFTPETQD--------AAYVISKAATNAYTRILAKKFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLP-KGGPSKCVF 488
            E +D+V  + LNDF   T          +AYV+SKA+ N YTR+LAKK  +  +N++CPG+VKTD+N   GVL+VEEGA S V L LLP +  PS C F
Sbjct:  190 ERIDQVINQLLNDFKEGTVKEKNWAKFMSAYVVSKASLNGYTRVLAKKHPEFRVNAVCPGFVKTDMNFKTGVLSVEEGASSPVRLALLPHQETPSGCFF 288          
BLAST of FC873120 vs. ExPASy Swiss-Prot
Match: MNR1_CAPAN ((+)-neomenthol dehydrogenase OS=Capsicum annuum GN=MNR1 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.516e-38
Identity = 50/98 (51.02%), Postives = 63/98 (64.29%), Query Frame = -1
Query:  219 E*LDEVPKEYLNDFTPETQDA--------AYVISKAATNAYTRILAKKFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLPKGGPSKCVF 488
            E +D+V  E+L DFT ++ ++        AY +SKA+  AYTR+LA K+    INS+CPGY KTD+N N G LT  EGAESLV L LLP  GPS   F
Sbjct:  209 EKVDQVVNEFLKDFTEKSTESKGWPSYFTAYKVSKASLIAYTRVLATKYPNFRINSVCPGYCKTDVNANTGSLTAGEGAESLVNLALLPNDGPSGLFF 306          

HSP 2 Score: 85.5001 bits (210), Expect = 5.516e-38
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  482 YELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 655
            YEL ++CI+TNYYG KRM EA IPLLQLS+SPRIVN +SSMGKLK + N+WA  VL D
Sbjct:  145 YELTKECIETNYYGAKRMTEAFIPLLQLSNSPRIVNVASSMGKLKLLCNKWAIEVLRD 202          
BLAST of FC873120 vs. ExPASy Swiss-Prot
Match: SALR_PAPBR (Salutaridine reductase OS=Papaver bracteatum GN=SALR PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.535e-31
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = -2
Query:  482 MLTQTYELAEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASSSMGKLKNITNEWAKGVLSD 670
            ++++TYELAE+C++ NYYG K + E L+PLLQLSDSPRIVN SSS G LK ++NE A  +L D
Sbjct:  137 LMSETYELAEECLKINYYGVKSVTEVLLPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGD 199          

HSP 2 Score: 73.559 bits (179), Expect = 5.535e-31
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = -1
Query:  231 AAYVISKAATNAYTRILAKKFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLPKGGPS 428
            AAY  SKA  NAYTR+LAKK  K  +N +CPG VKT++N   G  T +EGA+ +V + L P  GPS
Sbjct:  234 AAYTTSKACLNAYTRVLAKKIPKFQVNCVCPGLVKTEMNYGIGNYTADEGAKHVVRIALFPDDGPS 299          
BLAST of FC873120 vs. ExPASy Swiss-Prot
Match: CBR3_HUMAN (Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CBR3 PE=1 SV=3)

HSP 1 Score: 56.6102 bits (135), Expect = 8.865e-11
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  246 LDEVPKEYLNDFTPETQD------AAYVISKAATNAYTRILAK------KFTKICINSICPGYVKTDLNPNNGVLTVEEGAESLVWLVLLP 482
            L ++ K+++ D   E  +      + Y +SK      +RILA+      K  +I +N+ CPG VKTD++  + + TVEEGAE+ V+L LLP
Sbjct:  168 LVDLMKKFVEDTKNEVHEREGWPNSPYGVSKLGVTVLSRILARRLDEKRKADRILVNACCPGPVKTDMDGKDSIRTVEEGAETPVYLALLP 258          

HSP 2 Score: 30.8018 bits (68), Expect = 8.865e-11
Identity = 13/36 (36.11%), Postives = 23/36 (63.89%), Query Frame = -2
Query:  539 AEKCIQTNYYGNKRMCEALIPLLQLSDSPRIVNASS 646
            AE  ++TN++  + MC  L+P+++     R+VN SS
Sbjct:  107 AEMTLKTNFFATRNMCNELLPIMK--PHGRVVNISS 140          
The following BLAST results are available for this feature:
BLAST of FC873120 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SDR2_ARATH1.680e-4375.81Short-chain dehydrogenase/reductase 2 OS=Arabidops... [more]
SDR1_ARATH1.072e-4276.19(+)-neomenthol dehydrogenase OS=Arabidopsis thalia... [more]
MNR1_CAPAN5.516e-3851.02(+)-neomenthol dehydrogenase OS=Capsicum annuum GN... [more]
SALR_PAPBR5.535e-3160.32Salutaridine reductase OS=Papaver bracteatum GN=SA... [more]
CBR3_HUMAN8.865e-1136.26Carbonyl reductase [NADPH] 3 OS=Homo sapiens GN=CB... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI2CH10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873120 ID=FC873120; Name=FC873120; organism=Citrus clementina; type=EST; length=671bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAAGTAAAACAAAAACGTA
AAGCTTTATTTATTTGTCGGAGCAACATTGTCTGTCAAATGTCTCAAAGG
AGCATTCATAAACAAACAAGGCTTGGCATTTAGTCTTTTATTGGATACAT
TACGATAAAACAGCAAATCAAAATCATTTTCATAAATAGAGAGAGAGAGA
TGTGTCGTTTTCAATCAAAAATACACATTTTGAAGGACCTCCTTTGGGCA
GCAAAACTAACCACACTAAACTTTCAGCACCTTCTTCAACGGTTAATACG
CCGTTGTTGGGGTTTAAATCTGTTTTGACATAGCCAGGGCAAATACTATT
GATGCAAATTTTTGTGAATTTTTTCGCCAGGATCCTTGTGTAGGCATTAG
TTGCTGCTTTTGATATTACGTAAGCGGCGTCTTGGGTTTCAGGTGTAAAA
TCATTTAAATACTCCTTCGGCACCTCATCCAATCACTCAACACTCCTTTG
GCCCATTCATTTGTTATATTCTTTAACTTTCCCATGGAAGAGGAAGCATT
AACAATTCTGGGTGAATCTGATAACTGGAGGAGGGGAATAAGTGCTTCAC
ACATTCTTTTGTTACCATAGTAGTTTGTTTGAATGCACTTTTCAGCTAAC
TCATAAGTTTGAGTTAACATT
back to top