FC873121

Overview
NameFC873121
Unique NameFC873121
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length843
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1188 contig Ccv1_Contig1188:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873121 vs. ExPASy Swiss-Prot
Match: MAF1_BOVIN (Repressor of RNA polymerase III transcription MAF1 homolog OS=Bos taurus GN=MAF1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.295e-30
Identity = 90/239 (37.66%), Postives = 126/239 (52.72%), Query Frame = 3
Query:   96 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD---TDSSSPAEF-----------LLSRSSRKALIYLVLTLYHMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVHGSTYEDDGEIFDDMDM 767
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK +      E   ++ ++L    T   SP+             L  + SRK L YL+ TL   + PDYDFS  ++H+F  E S +         +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++LKR+V   FSC S        + GSTY    E  +++DM
Sbjct:    1 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPSRLSKSQGGEDEGPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLSWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVF--FSCRS--------ISGSTY-TPSEAGNELDM 222          
BLAST of FC873121 vs. ExPASy Swiss-Prot
Match: MAF1_HUMAN (Repressor of RNA polymerase III transcription MAF1 homolog OS=Homo sapiens GN=MAF1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.691e-30
Identity = 90/239 (37.66%), Postives = 125/239 (52.30%), Query Frame = 3
Query:   96 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD---TDSSSPAEF-----------LLSRSSRKALIYLVLTLYHMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVHGSTYEDDGEIFDDMDM 767
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK +      E   ++ ++L    T   SP+             L  + SRK L YL+ TL   + PDYDFS  ++H+F  E S +         +F A +E         L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++LKR+V   FSC S        + GSTY    E  +++DM
Sbjct:    1 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPSRLSKSQGGEEEGPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLSWVVNAVNCSLFSAVRE-----DFKDLKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVF--FSCRS--------ISGSTY-TPSEAGNELDM 222          
BLAST of FC873121 vs. ExPASy Swiss-Prot
Match: MAF1_XENLA (Repressor of RNA polymerase III transcription MAF1 homolog OS=Xenopus laevis GN=maf1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.885e-30
Identity = 87/215 (40.47%), Postives = 114/215 (53.02%), Query Frame = 3
Query:   96 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHE----ILDYL------------GKSLDTDSSSPAEFLLSRSSRKALIYLVLTLYHMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLS 689
            MK LE +  + +N  L  +  G+  I G +E+YSCK  G DK +      E    +L+ L            GKS   D   P   L  + SRK L YL+ TL   + PDYDFSA +AH+F  E S N       + +  A  +       +SL   L+ A+DE + L EC+IYSYNPD D DPF E G +WSFN+FFYN+KLKR+V   FSC S
Sbjct:    1 MKLLENSHFEAVNSQLC-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTGISPSRLGKSQGADEEGP---LSDKCSRKTLFYLIATLNESFRPDYDFSAARAHEFSREPSLNWVVNAVNSSLVSALGD-----DFTSLRPNLWDAVDEEINLSECDIYSYNPDLDCDPFGEDGNLWSFNYFFYNKKLKRIVF--FSCRS 204          
BLAST of FC873121 vs. ExPASy Swiss-Prot
Match: MAF1_RAT (Repressor of RNA polymerase III transcription MAF1 homolog OS=Rattus norvegicus GN=Maf1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.768e-30
Identity = 87/227 (38.33%), Postives = 119/227 (52.42%), Query Frame = 3
Query:   96 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD---TDSSSPAEF-----------LLSRSSRKALIYLVLTLYHMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVHGSTY 731
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK +      E   ++ ++L    T   SP+             L  + SRK L YL+ TL   + PDYDFS  ++H+F  E S           +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++LKR+V   FSC S        + GSTY
Sbjct:    1 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPSRLSKSQGGEDESPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLRWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVF--FSCRS--------ISGSTY 211          
BLAST of FC873121 vs. ExPASy Swiss-Prot
Match: MAF1_MOUSE (Repressor of RNA polymerase III transcription MAF1 homolog OS=Mus musculus GN=Maf1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.768e-30
Identity = 87/227 (38.33%), Postives = 119/227 (52.42%), Query Frame = 3
Query:   96 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLD---TDSSSPAEF-----------LLSRSSRKALIYLVLTLYHMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVAEGFLVHGSTY 731
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK +      E   ++ ++L    T   SP+             L  + SRK L YL+ TL   + PDYDFS  ++H+F  E S           +F A +E        +L   L+ A+DE + L EC+IYSYNPD DSDPF E G++WSFN+FFYN++LKR+V   FSC S        + GSTY
Sbjct:    1 MKLLENSSFEAINSQLT-VETGDAHIIGRIESYSCKMAGDDKHMFKQFCQEGQPHVLEALSPPQTSGLSPSRLSKSQGGEDESPLSDKCSRKTLFYLIATLNESFRPDYDFSTARSHEFSREPSLRWVVNAVNCSLFSAVRE-----DFKALKPQLWNAVDEEICLAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRLKRIVF--FSCRS--------ISGSTY 211          
BLAST of FC873121 vs. ExPASy Swiss-Prot
Match: MAF1_DANRE (Repressor of RNA polymerase III transcription MAF1 homolog OS=Danio rerio GN=maf1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.768e-30
Identity = 85/216 (39.35%), Postives = 116/216 (53.70%), Query Frame = 3
Query:   96 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLDTDSSS---PAEF----------LLSRSSRKALIYLVLTLYHMY-PDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNLVA 701
            MK LE +  + IN  L  +  G+  I G +E+YSCK  G DK++      E   ++ ++L    SS   P +           L  + SRK L YL+ TL   + PDYDFS  K H F  E S N    +F       S    E Y  S L   L++ALD+ + L EC+IYSYNPD DSDP+ E+G +WSFN+FFYN++LKR+V F    +S  +A
Sbjct:    1 MKLLENSSFEAINSLLT-IETGDCKIIGRIESYSCKMAGDDKQMFKQFCQEGQPHVLEALSPPQSSGISPNKLSHSLDDGEGPLSDKCSRKTLFYLIATLNESFRPDYDFSRTKGHDFSKEPSVNW---VFNAVNSSLSAAAGEAY--SHLQPQLWEALDKEISLAECDIYSYNPDLDSDPYGEEGNLWSFNYFFYNKRLKRIVFFTCRSVSLFMA 210          
BLAST of FC873121 vs. ExPASy Swiss-Prot
Match: MAF1_DICDI (Repressor of RNA polymerase III transcription OS=Dictyostelium discoideum GN=maf1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.214e-22
Identity = 70/245 (28.57%), Postives = 116/245 (47.35%), Query Frame = 3
Query:   96 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDY---------------------------------------LGKSLDTDSS------SPAEFLLSRSSRKALIYLVLTLYHMYPDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVVSFRFSCLSNL 695
            MK+++   L  +N +L+ +++G+  + G LEAYSCK  G+DK++  SL+ E+ +                                        L  S+++ S       SP   + + +SRK +IYL+  L   +PDYDF+  K  QF  E S N         +    K++   +        L+  L+  + L +CEIY Y P++  DPF E G ++SFN+FFYN+ LK+++ F+   +S L
Sbjct:    1 MKYIDSLQLIGLNSYLNSIDVGDALLMGELEAYSCKMAGSDKKIYRSLDKELEELSNTNSGAMNITNSNNNTNNNNNNNSNSGSSNNNNNNNNTLSVSMNSPSPTSNISVSPFGPMSNSTSRKTMIYLIQLLNLSFPDYDFTDSKPEQFQKEPSLNLVINSINANLAGYIKDYYLEFEAK-----LWSTLESEISLQKCEIYLYKPEN-GDPFTENGVLFSFNYFFYNKSLKKIIFFKCRYISKL 239          
BLAST of FC873121 vs. ExPASy Swiss-Prot
Match: YEJC_SCHPO (Uncharacterized protein C31G5.12c OS=Schizosaccharomyces pombe GN=SPAC31G5.12c PE=2 SV=5)

HSP 1 Score: 104.375 bits (259), Expect = 8.414e-22
Identity = 61/200 (30.50%), Postives = 106/200 (53.00%), Query Frame = 3
Query:   96 MKFLEYTPLDRINDFLDHLNLGERTIKGCLEAYSCKHTGTDKRLSISLEHEILDYLGKSLDTDSSSPAEFLLSR----------SSRKALIYLVLTLYHMYPDYDFSAVKAHQFFTEESWNTFKQIFETYMFEASKEWSETYGGSSLLETLYKALDEVVKLPECEIYSYNPDSDSDPFLEKGAIWSFNFFFYNRKLKRVV 665
            MKFLE   LD +N+ L   +  +  I+G  E Y+ K T +DK+L  ++E+   + L  +L +  S    F L++          SSR+  +Y+V TL   YPD+DFS+++   F+ E S +       + +    +       G   +  +++ +D  + L +C +YSY PDSDSDP+ +   IW  ++FF+N+ +KR++
Sbjct:    1 MKFLELADLDTVNNALS-FDADDCRIRGKCELYTTKSTNSDKKLFKAIENRCQEDLF-ALSSSKSPEYAFSLTQQSPFGPLDQSSSRRTFMYIVATLNASYPDHDFSSLQPTDFYKEPSLSRVVDSVNSTLNNIGR-------GRLSVNGIWEIIDRHINLSDCSVYSYTPDSDSDPYGDDALIWGMSYFFFNKNMKRML 191          
The following BLAST results are available for this feature:
BLAST of FC873121 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MAF1_BOVIN1.295e-3037.66Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_HUMAN1.691e-3037.66Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_XENLA2.885e-3040.47Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_RAT3.768e-3038.33Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_MOUSE3.768e-3038.33Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_DANRE3.768e-3039.35Repressor of RNA polymerase III transcription MAF1... [more]
MAF1_DICDI2.214e-2228.57Repressor of RNA polymerase III transcription OS=D... [more]
YEJC_SCHPO8.414e-2230.50Uncharacterized protein C31G5.12c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CH11FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CH11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873121 ID=FC873121; Name=FC873121; organism=Citrus clementina; type=EST; length=843bp
CTTGCAATCTTTTTTCGTTTTAAGGATCTTCTGAAAGATTGTTGATCCCT
TTGTGCAATTTAAATTGAAATTTATTTTATCCATCATTGACCACCATGAA
GTTCTTAGAATACACTCCTCTAGACCGCATCAATGATTTCTTGGATCATT
TGAATCTTGGGGAACGTACTATCAAAGGATGCCTCGAAGCATATTCTTGC
AAACACACGGGAACTGATAAAAGACTGTCTATCAGCTTGGAACATGAGAT
TCTTGATTATCTTGGGAAATCATTGGATACTGACTCTTCCTCACCAGCTG
AATTCCTTTTGAGCAGATCCAGCCGAAAGGCATTGATCTACCTGGTGCTT
ACCCTCTATCACATGTATCCGGACTATGACTTCAGTGCTGTGAAAGCACA
CCAGTTCTTCACAGAGGAAAGCTGGAACACTTTTAAGCAGATCTTTGAGA
CCTACATGTTTGAAGCTTCAAAGGAATGGAGTGAGACATACGGAGGCAGT
TCCCTTCTGGAAACATTATACAAGGCTTTGGATGAGGTTGTGAAGTTACC
TGAATGTGAAATTTACAGTTACAATCCAGATTCTGATTCAGACCCATTCC
TTGAGAAAGGAGCAATATGGTCTTTCAATTTCTTCTTCTACAACAGAAAA
CTAAAGCGTGTTGTCAGTTTCCGGTTTTCTTGCTTAAGTAATTTGGTGGC
GGAAGGATTTCTAGTNCATGGCTCAACTTACGAAGACGATGGAGAAATAT
TTGATGACATGGACATGTGAATACTAACAAACTTATGCTGTTAGTGCAAT
GTTTATATGTCAATACTCTTGACTTCTTCATGTAGTTACTGTA
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