FC873125

Overview
NameFC873125
Unique NameFC873125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length828
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1065 contig Ccv1_Contig1065:2..829. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSJ (Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 1
Query:    7 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLA 225
            + I HLEFR+ HPAPG+PE LI +MF HS GASREGLGLYISQKLVK M+GTVQY+RE+E SSF++L+EFP+A
Sbjct: 1051 MQIAHLEFRLVHPAPGVPEALIQEMFRHSPGASREGLGLYISQKLVKTMSGTVQYLRESESSSFIVLVEFPVA 1123          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYC_ORYSI (Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 1
Query:    7 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLA 225
            + I HLEFR+ HPAPG+PE LI +MF HS GASREGLGLYISQKLVK M+GTVQY+RE+E SSF++L+EFP+A
Sbjct: 1051 MQIAHLEFRLVHPAPGVPEALIQEMFRHSPGASREGLGLYISQKLVKTMSGTVQYLRESESSSFIVLVEFPVA 1123          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYC_SORBI (Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.158e-23
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    7 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLA 225
            + I HLEFRI HPAPG+PE LI +MF H+   SREGLGLYI QKLVK M+GTVQY+REA+ SSF+ILIEFP+A
Sbjct: 1049 MQIAHLEFRIVHPAPGVPEALIQEMFRHNPEVSREGLGLYICQKLVKTMSGTVQYLREADTSSFIILIEFPVA 1121          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHY_PICAB (Phytochrome OS=Picea abies PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.377e-21
Identity = 46/73 (63.01%), Postives = 61/73 (83.56%), Query Frame = 1
Query:    7 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLA 225
            ++++H+EFRITH   GIPE+LI +MF H+Q   +EGLGLY+ Q+LVK+MNG VQY+REA RSSF+I +EFPLA
Sbjct: 1059 VNVMHMEFRITHSGQGIPEELIKEMFVHNQDMFQEGLGLYMCQQLVKIMNGDVQYLREAGRSSFIINVEFPLA 1131          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHY1_SELMA (Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.171e-21
Identity = 45/82 (54.88%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    7 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDADKTK 252
            +H++HLEFRITHP  G+PE+L+ +MF   +G ++EGLGL + +KLVKLMNG V+YIREA ++ FL+ +E PLA + DA   K
Sbjct: 1048 VHVMHLEFRITHPGVGLPEELVQEMFDRGRGMTQEGLGLSMCRKLVKLMNGEVEYIREAGKNYFLVSLELPLAQRDDAGSVK 1129          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHY_PINSY (Phytochrome OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 44/82 (53.66%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    7 IHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDADKTK 252
            +H+VHLEFRITHP  G+P +L+ D+F  SQ A++EG+GL + +KL+KLMNG V+YIRE+    FL+ +EFP+A ++DA   K
Sbjct: 1050 LHVVHLEFRITHPGLGLPAELVQDLFDRSQWATQEGVGLSMCRKLLKLMNGDVRYIRESGICYFLVNVEFPMAQREDAASIK 1131          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYA_CUCPE (Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.121e-18
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1
Query:    1 KNIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQ 231
            K++H+VHLEFRIT+   GIPE L+++MF   + AS EG  L IS+KLVKLMNG V+Y+REA +SSF+I +E   AH+
Sbjct: 1044 KSVHLVHLEFRITYAGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHK 1120          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHY2_CERPU (Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.260e-18
Identity = 37/79 (46.84%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    4 NIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDA 240
            N+H++HLEFR++HP  G+P++L+ +M+  ++G ++EGLGL + +KLV+LMNG VQY+RE  +  F++ +E P+A + DA
Sbjct: 1039 NVHVMHLEFRVSHPGGGLPDELVLEMYDRAKGMTQEGLGLNMCRKLVRLMNGDVQYVRENAQCYFVVYVELPMAQRDDA 1117          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHY1_PHYPA (Phytochrome 1 OS=Physcomitrella patens GN=PHY1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.564e-18
Identity = 38/79 (48.10%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    4 NIHIVHLEFRITHPAPGIPEKLIHDMFYHSQGASREGLGLYISQKLVKLMNGTVQYIREAERSSFLILIEFPLAHQKDA 240
            ++H+VHLEFR++HP  G+PE+L+ +M+   +G ++EGLGL + +KLV+LMNG V Y+REA +  F++ +E P+A + DA
Sbjct: 1041 SVHVVHLEFRVSHPGAGLPEELVLEMYDRGKGMTQEGLGLNMCRKLVRLMNGDVHYVREAMQCYFVVNVELPMAQRDDA 1119          
BLAST of FC873125 vs. ExPASy Swiss-Prot
Match: PHYC_ARATH (Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18
Identity = 47/76 (61.84%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 KNIHIVHLEFRITHPAPGIPEKLIHDMFYH-SQGASREGLGLYISQKLVKLM-NGTVQYIREAERSSFLILIEFPL 222
            K +  V LEFRI HPAPG+PE L+ +MF    +G SREGLGL+I+QKLVKLM  GT++Y+RE+E S+F+IL EFPL
Sbjct: 1035 KRMKRVELEFRIIHPAPGLPEDLVREMFQPLRKGTSREGLGLHITQKLVKLMERGTLRYLRESEMSAFVILTEFPL 1110          
The following BLAST results are available for this feature:
BLAST of FC873125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PHYC_ORYSJ1.615e-2572.60Phytochrome C OS=Oryza sativa subsp. japonica GN=P... [more]
PHYC_ORYSI1.615e-2572.60Phytochrome C OS=Oryza sativa subsp. indica GN=PHY... [more]
PHYC_SORBI1.158e-2371.23Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1[more]
PHY_PICAB5.377e-2163.01Phytochrome OS=Picea abies PE=2 SV=1[more]
PHY1_SELMA9.171e-2154.88Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=... [more]
PHY_PINSY2.259e-1953.66Phytochrome OS=Pinus sylvestris PE=2 SV=1[more]
PHYA_CUCPE1.121e-1857.14Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1[more]
PHY2_CERPU4.260e-1846.84Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 ... [more]
PHY1_PHYPA5.564e-1848.10Phytochrome 1 OS=Physcomitrella patens GN=PHY1 PE=... [more]
PHYC_ARATH9.491e-1861.84Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AA03FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873125 ID=FC873125; Name=FC873125; organism=Citrus clementina; type=EST; length=828bp
AAAAATATACACATTGTTCACCTTGAATTCCGGATCACTCATCCAGCACC
TGGAATCCCTGAAAAGTTAATTCATGATATGTTTTACCATAGCCAGGGTG
CCTCAAGGGAAGGTCTTGGCCTATACATCAGCCAAAAGCTTGTTAAGCTT
ATGAATGGCACTGTGCAGTATATCAGAGAGGCGGAAAGATCATCCTTCCT
TATCCTCATTGAATTTCCTTTGGCCCACCAAAAAGATGCTGATAAAACCA
AATAACCAGCTCAGTTTAATGAGCAAATGAACAAGTTGTGCTGACGCATA
ACATGATGCTGAGAAGTAGCATGTCATTCTGGTGAATGAATGCCTCTTTG
TTCAGTTTTAATCATGGATTTTCTCAAGGTTGGGTGATGCTGGAAATTTA
CCCCCTCGACTTGGCATGGTGGGTTATCTCGGTAAAGCCACTGAAGCAGC
AGTGTGGAGTTGTACTCGGAGATTTTGAAAATGAAGAAACCTGAGTTTCC
AGTGAAGACCTATACAACCTGCATCTTCAACTCAGATAGAATCTTAATCT
TGTCTTTTGTAACATCATTTTTCCACGTACATTGTTTCTCAATGAGAACA
AAGAAAAAGAAAAATCTAATTTGGTCACAGTTTGTAACTCTGGAGTAAGA
CTCTCCCAGCAAGTGTCTCAACAACATAAAGCACATAGCACACTGTACAG
TGAGACTTCATTGATAATCAAACCAGAAGTGTATTGTTCTCCAGCTCTGG
ACCTGGGGATAGTCTGTTGTAACTTCTCTGCATATGAATTAAACGAAGTG
TGACGACCAAAAAAAAAAAAAAAAAAAA
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