FC873139

Overview
NameFC873139
Unique NameFC873139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length808
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1071 contig Ccv1_Contig1071:1..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4_MEDTR (Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.658e-104
Identity = 185/267 (69.29%), Postives = 209/267 (78.28%), Query Frame = 3
Query:    6 FNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            F S FSV ETYSESS+SEKK VH++++GW AAV+++V+ GSMRR  ERVLG  RT +SSS  DIWLLGVCHKI+Q               F QDF SRILI+YRKGFD I DSK TSDV WGCMLRSSQMLVAQALLFH+LGR WRK + KP D+EY++IL LFGDSE + FSIHNLLQAGK YGLA GSWVGPYAMCR+WE LAR QR +   G Q LPMAIYVVSGDEDGERGGAPVVCI+DA + C  FS+G   WTP+LLLVP
Sbjct:   52 FTSGFSVDETYSESSSSEKKTVHSRNSGWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGDVDIRNVFAAFEQDFFSRILITYRKGFDAIEDSKYTSDVNWGCMLRSSQMLVAQALLFHKLGRSWRKTVDKPVDKEYIDILQLFGDSEAAAFSIHNLLQAGKGYGLAVGSWVGPYAMCRTWEVLARNQREKNEQGEQLLPMAIYVVSGDEDGERGGAPVVCIEDACKRCLEFSRGLVPWTPLLLLVP 318          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_ARATH (Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 2.405e-87
Identity = 158/269 (58.74%), Postives = 201/269 (74.72%), Query Frame = 3
Query:    3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            +F S+ SV + Y ESS S  K V    NGWTA VKR+ + +G++RR  ERVLGP+RTG+ S+TSD+WLLGVC+KI+                   DFSS+IL++YRKGF+P  D+  TSDV WGCM+RSSQML AQALLFHRLGR W K  + P ++EY+E L  FGDSE S FSIHNL+ AG +YGLAAGSWVGPYA+CR+WE+LA  +R +T    Q+LPMA+++VSG EDGERGGAP++CI+DA++ C  FSKGQ++WTPI+LLVP
Sbjct:   46 VFTSSSSVSQPYRESSTSGHKQVCTTRNGWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLGVCYKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSSQMLFAQALLFHRLGRAWTKKSELP-EQEYLETLEPFGDSEPSAFSIHNLIIAGASYGLAAGSWVGPYAICRAWESLACKKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATKSCLEFSKGQSEWTPIILLVP 313          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_ORYSJ (Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B PE=2 SV=1)

HSP 1 Score: 311.227 bits (796), Expect = 4.246e-84
Identity = 153/270 (56.67%), Postives = 196/270 (72.59%), Query Frame = 3
Query:    3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            +FNS F++FE + +SSA++     + S  W+  ++R+V +GSM R     LG S+     ++SD+W LG C+K++                F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WR+PL+KP++ EY+ ILH+FGDSE   FSIHNLLQAG +YGLAAGSWVGPYAMCR+W+ L R  R +  +  G +S PMA+YVVSGDEDGERGGAPVVCID A++ C  F+KGQ+ W+PILLLVP
Sbjct:   48 VFNSPFNIFEAHQDSSANKSPKSSSGSYDWSRVLRRIVCSGSMWRF----LGTSKV---LTSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPLEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLAAGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVP 310          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_ARATH (Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 9.459e-84
Identity = 152/266 (57.14%), Postives = 193/266 (72.56%), Query Frame = 3
Query:   12 SAFSVFETYSESSASEKKAVHNKSNGWTAAVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            S+  V +   E+S S    V    + WT  +K   + +G++RR  +RVLGPSRTGISSSTS+IWLLGVC+KI++               F QDFSS IL++YR+GF+PIGD+  TSDV WGCMLRS QML AQALLF RLGR WRK   +P D +Y+EIL LFGD+E S FSIHNL+ AG++YGLAAGSWVGPYA+CRSWE+LAR  + ET    +S  MA+++VSG EDGERGGAP++CI+D ++ C  FS+G+ +W PILLLVP
Sbjct:   52 SSSPVSQLCREASTSGHNPVCTTHSSWTVILKTASMASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFSSLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLGRSWRKKDSEPADEKYLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWESLARKNKEETDDKHKSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPILLLVP 317          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_ORYSI (Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.235e-83
Identity = 156/270 (57.78%), Postives = 191/270 (70.74%), Query Frame = 3
Query:    3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            +F+S FS+FE + +SSA      H+ S  W+  ++R+   GSM R     LG S+   + ++SD+W LG C+K++                F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WRKP QKP+  EY+ ILH+FGDSE   FSIHNLLQAGK+YGLAAGSWVGPYAMCR+W+ L R  R   E   G  + PMA+YVVSGDEDGERGGAPVVCID A++ C  F+KGQ+ W+PILLLVP
Sbjct:   44 VFSSPFSIFEAHQDSSAHRPLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQTLVRTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVP 306          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_ORYSI (Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 3.595e-83
Identity = 152/270 (56.30%), Postives = 194/270 (71.85%), Query Frame = 3
Query:    3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGL--GCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            +FNS F++FE + +SSA++     + S  W   ++R+V +GSM R     LG S+     ++SD+W LG C+K++                F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WR+P +KP++ EY+ ILH+FGDSE   FSIHNLLQAG +YGLAAGSWVGPYAMCR+W+ L R  R +  +  G +S PMA+YVVSGDEDGERGGAPVVCID A++ C  F+KGQ+ W+PILLLVP
Sbjct:   48 VFNSPFNIFEAHQDSSANKSPKSSSGSYDWLRVLRRIVCSGSMWRF----LGTSKV---LTSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPSEKPYNPEYIGILHMFGDSEACAFSIHNLLQAGNSYGLAAGSWVGPYAMCRAWQTLVRTNREQHEVVDGNESFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKGQSTWSPILLLVP 310          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_ORYSJ (Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A PE=3 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.330e-82
Identity = 154/270 (57.04%), Postives = 190/270 (70.37%), Query Frame = 3
Query:    3 LFNSAFSVFETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRA--ETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQADWTPILLLVP 806
            +F+S FS+FE + +SSA+     H+ S  W+  ++R+   GSM R     LG S+   + ++SD+W LG C+K++                F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RSSQMLVAQAL+FH LGR WRKP QKP+  EY+ ILH+FGDSE   FSIHNLLQAGK+YGLAAGSWVGPYAMCR+W+ L    R   E   G  + PMA+YVVSGDEDGERGGAPVVCID A++ C  F+K Q+ W+PILLLVP
Sbjct:   45 VFSSPFSIFEAHQDSSANRSLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQTLVCTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKNQSTWSPILLLVP 307          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_MOUSE (Cysteine protease ATG4A OS=Mus musculus GN=Atg4a PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.883e-22
Identity = 65/195 (33.33%), Postives = 90/195 (46.15%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWEALARCQRAETGLGCQSLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKGQAD---------------------WTPILLLVP 806
            D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W    QK   +EY  IL  F D +   +SIH + Q G   G + G W GP  + +  + LA      +        +A+YV   +          V I+D  + C V   G AD                     W P+LL+VP
Sbjct:   48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWNWERQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVIKKLALFDEWNS--------LAVYVSMDN---------TVVIEDIKKMCCVLPVGAADPAGDFLTASNQSRDTSVPCSAWKPLLLIVP 225          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4A_HUMAN (Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.756e-21
Identity = 64/188 (34.04%), Postives = 92/188 (48.94%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALARCQRAETGLGCQSLPMAIYV--VSGDEDGERGGAPVVCIDDA---SRHCSVFSKGQADWTPILLLVP 806
            D S+R+  +YR+ F PIG +  +SD GWGCMLR  QM++AQAL+   LGR W    QK   +EY  IL  F D +   +SIH + Q G   G + G W GP          A+   W +LA     +  +  + +     V  +S D  G+R    +   + +   S +CS        W P+LL+VP
Sbjct:   48 DISARLWFTYRRKFSPIGGTGPSSDAGWGCMLRCGQMMLAQALICRHLGRDWSWEKQKEQPKEYQRILQCFLDRKDCCYSIHQMAQMGVGEGKSIGEWFGPNTVAQVLKKLALFDEWNSLAVYVSMDNTVVIEDIKKMCRVLPLSADTAGDRPPDSLTASNQSKGTSAYCSA-------WKPLLLIVP 228          
BLAST of FC873139 vs. ExPASy Swiss-Prot
Match: ATG4B_BOVIN (Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 71/197 (36.04%), Postives = 92/197 (46.70%), Query Frame = 3
Query:  285 DFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRLGRPWRKPLQKPFDREYVEILHLFGDSETSPFSIHNLLQAGKAYGLAAGSWVGP---------YAMCRSWEALA-------RCQRAETGLGCQ-SLPMAIYVVSGDEDGERGGAPVVCIDDASRHCSVFSKG------QADWTPILLLVP 806
            D +SR+  +YRK F  IG +  TSD GWGCMLR  QM+ AQAL+   LGR WR   +K     Y  +L  F D + S +SIH + Q G   G + G W GP          A+  +W ALA           A+    C+ SLP A             GA      D+ RHC+ F  G       A W P++LL+P
Sbjct:   45 DVASRLWFTYRKNFPAIGGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWTQRKRQPDSYCSVLQAFLDRKDSCYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLAVFDTWSALAVHVAMDNTVVMADIRRLCRSSLPCA-------------GAEAFPA-DSERHCNGFPAGAEGGGRAAPWRPLVLLIP 227          
The following BLAST results are available for this feature:
BLAST of FC873139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
ATG4_MEDTR1.658e-10469.29Cysteine protease ATG4 OS=Medicago truncatula GN=A... [more]
ATG4A_ARATH2.405e-8758.74Cysteine protease ATG4a OS=Arabidopsis thaliana GN... [more]
ATG4B_ORYSJ4.246e-8456.67Cysteine protease ATG4B OS=Oryza sativa subsp. jap... [more]
ATG4B_ARATH9.459e-8457.14Cysteine protease ATG4b OS=Arabidopsis thaliana GN... [more]
ATG4A_ORYSI1.235e-8357.78Cysteine protease ATG4A OS=Oryza sativa subsp. ind... [more]
ATG4B_ORYSI3.595e-8356.30Cysteine protease ATG4B OS=Oryza sativa subsp. ind... [more]
ATG4A_ORYSJ2.330e-8257.04Cysteine protease ATG4A OS=Oryza sativa subsp. jap... [more]
ATG4A_MOUSE7.883e-2233.33Cysteine protease ATG4A OS=Mus musculus GN=Atg4a P... [more]
ATG4A_HUMAN1.756e-2134.04Cysteine protease ATG4A OS=Homo sapiens GN=ATG4A P... [more]
ATG4B_BOVIN5.110e-2136.04Cysteine protease ATG4B OS=Bos taurus GN=ATG4B PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AB10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873139 ID=FC873139; Name=FC873139; organism=Citrus clementina; type=EST; length=808bp
GCTTGTTTAATTCTGCTTTCTCAGTCTTTGAAACGTATAGTGAGTCGTCA
GCTAGTGAAAAGAAGGCAGTTCATAATAAAAGTAATGGGTGGACAGCAGC
TGTGAAGAGACTAGTGACTGCTGGCTCAATGAGGAGAATACATGAACGTG
TACTAGGGCCGAGCAGGACTGGAATTTCTAGCTCAACCAGTGACATATGG
CTTCTTGGTGTGTGCCATAAAATTGCACAGGATGAGGCCTTGGGTGATGC
AGCTGGTAACAATGGATTAGCGGAATTCAATCAAGATTTTTCATCAAGAA
TTCTGATTTCATATCGTAAAGGTTTTGATCCTATTGGTGATTCAAAGATT
ACAAGTGATGTAGGCTGGGGTTGCATGCTTCGAAGTAGTCAGATGCTTGT
TGCACAGGCATTGCTTTTTCATCGATTGGGAAGACCTTGGAGAAAACCTT
TGCAGAAGCCATTTGATCGTGAATATGTTGAGATCTTGCACCTTTTTGGT
GATTCTGAGACATCACCTTTCTCCATTCACAATCTTCTTCAAGCTGGAAA
GGCTTATGGCCTTGCAGCTGGATCATGGGTTGGCCCATATGCCATGTGTC
GCTCATGGGAAGCTCTAGCTCGTTGTCAGAGAGCGGAAACTGGCCTTGGA
TGCCAGTCACTTCCAATGGCTATTTATGTTGTTTCAGGTGATGAAGATGG
GGAGCGAGGTGGAGCTCCAGTTGTGTGTATTGACGATGCATCTAGACATT
GTTCTGTGTTTTCAAAAGGTCAAGCTGACTGGACACCAATTCTTCTGCTT
GTTCCCTT
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