FC873143

Overview
NameFC873143
Unique NameFC873143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length785
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873143_ssr474 microsatellite FC873143_ssr474:474..485. BLAST: Citrus ESTs to Prunus persica proteins V1
FC873143_ssr757 microsatellite FC873143_ssr757:757..768. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14876 contig Ccv1_Contig14876:6..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.209e-23
Identity = 75/212 (35.38%), Postives = 93/212 (43.87%), Query Frame = 3
Query:  165 SPPPRR-----LTQEQELAIMVAALENVVVGNTDN----DFSTDIFRFQDWXXXXXXXXXXXXXXXXXXXXXFGNAMLP--PADTCQVCNIQGCLGCNYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFPDSTT 740
            +P P R     L+ EQEL+++V+AL++V+ G  +      FS+D                              +A +P   +DTCQVC I+GCLGCNYF                                                 YRGVRQRPWGK+AAEIRDP+RATRVWLGTF T              FRGPRAKLNF F D T+
Sbjct:   13 APAPTRYQKEQLSPEQELSVIVSALQHVISGENETAPCQGFSSDSTVI--------------------------SAGMPRLDSDTCQVCRIEGCLGCNYFFAPNQRIEKNHQQEEEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTS 198          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.820e-15
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  549 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            NYRGVRQRPWGKWAAEIRDP +A RVWLGTF+T              FRG +AKLNF
Sbjct:   69 NYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF 125          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 37/56 (66.07%), Postives = 39/56 (69.64%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            YRGVRQRPWGKWAAEIRDP +ATRVWLGTF T              FRG +AKLNF
Sbjct:   61 YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 37/56 (66.07%), Postives = 39/56 (69.64%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            YRGVRQRPWGKWAAEIRDP RA RVWLGTF+T              FRG +AKLNF
Sbjct:   77 YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  549 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            +YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +AKLNF
Sbjct:   89 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.384e-14
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  549 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            +YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +AKLNF
Sbjct:   38 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  549 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            +YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +AKLNF
Sbjct:   91 HYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.847e-14
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNF 719
            YRG+R+RPWGKWAAEIRDPR+  RVWLGTFNT               RG +AKLNF
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNF 134          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFPDSTTVA 746
            +RG+RQRPWGKWAAEIRDPR+  RVWLGTFN+               RG +AK+N  FP++ T A
Sbjct:  120 FRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVN--FPEAPTTA 182          
BLAST of FC873143 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.680e-13
Identity = 36/62 (58.06%), Postives = 39/62 (62.90%), Query Frame = 3
Query:  552 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTXXXXXXXXXXXXXXFRGPRAKLNFSFPDST 737
            +RGVRQRPWGKWAAEIRDP R  RVWLGTF+T               RGP A+LNF  P  T
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVT 148          
The following BLAST results are available for this feature:
BLAST of FC873143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
EF109_ARATH5.209e-2335.38Ethylene-responsive transcription factor ERF109 OS... [more]
EF112_ARATH6.820e-1564.91Ethylene-responsive transcription factor ERF112 OS... [more]
RAP26_ARATH8.907e-1566.07Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF110_ARATH1.519e-1466.07Ethylene-responsive transcription factor ERF110 OS... [more]
EF114_ARATH3.384e-1461.40Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH3.384e-1461.40Ethylene-responsive transcription factor ERF113 OS... [more]
EF115_ARATH4.420e-1461.40Ethylene-responsive transcription factor ERF115 OS... [more]
RAP23_ARATH9.847e-1460.71Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF1_ORYSJ1.680e-1353.85Ethylene-responsive transcription factor 1 OS=Oryz... [more]
CRF1_ARATH1.680e-1358.06Ethylene-responsive transcription factor CRF1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AC06FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AC06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873143 ID=FC873143; Name=FC873143; organism=Citrus clementina; type=EST; length=785bp
CTTTCAATTCCAGAGCCAACACGAACACACGAACAACTGAAACATAAGGA
AAAAAAAAAAAAAAAAAAAAAAAGAAATAAGAAAATAAATCGACAACGAA
GATGCAAAGATCCTCAAAGCGACAGAGATTCTGCGCCGTTTCCGCCGCCC
ACAACCCGCAGCCGTCGCCTCCGCCGCGTCGTCTCACCCAAGAGCAAGAA
CTCGCCATCATGGTCGCAGCGCTCGAAAACGTCGTCGTCGGAAACACAGA
CAACGATTTCTCCACCGATATTTTTCGATTTCAAGATTGGACGGCGTCTA
ACGCAGCAGCCATCGCCTCCACGTCCACGAGTTATAATAACCACAACACT
AATTTTGGAAATGCGATGCTACCTCCTGCCGACACGTGTCAAGTGTGCAA
CATTCAAGGATGTTTGGGATGCAATTATTTCCCGCCAAATAATAACCATT
ACCCCCACCAACAACAACAGCCTCAGCAGCAGCAGCACCAACGGCAAAAG
AAAGCAGCAGCTGGTAGCAGCGGCGCGGGAAAGAGGAGAGGGAAGAAGAA
TTACAGAGGGGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCTGAGATTC
GTGACCCGAGGAGGGCGACCCGTGTCTGGCTGGGGACGTTCAACACGGCG
GAGGAGGCAGCGAGGGCGTACGATAAGGCCGCCGTTGAGTTCCGTGGGCC
CAGGGCCAAGCTTAATTTCTCATTTCCCGATAGCACGACGGTGGCAACAG
CATACGAGCAGCAGCAGCAGGGGGAGTCATCGCAT
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