FC873159

Overview
NameFC873159
Unique NameFC873159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10133 contig Ccv1_Contig10133:1..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873159 vs. ExPASy Swiss-Prot
Match: LEUNG_ARATH (Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.517e-16
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    1 ESFLSQDDGDGRDLFGTLKRNPSEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKK 204
            ESFLSQ+DGD RD           +  + SK F+F EV+S+R S++KVTCCHFSSDGK+LASAGHDKK
Sbjct:  615 ESFLSQEDGDQRDAV--------TRCMDVSKGFTFTEVNSVRASTTKVTCCHFSSDGKMLASAGHDKK 674
The following BLAST results are available for this feature:
BLAST of FC873159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LEUNG_ARATH3.517e-1660.29Transcriptional corepressor LEUNIG OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAI1AD05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AD05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873159 ID=FC873159; Name=FC873159; organism=Citrus clementina; type=EST; length=403bp
GAATCTTTTCTCTCTCAAGATGATGGAGATGGAAGGGATCTGTTTGGCAC
ATTGAAACGGAACCCTTCCGAACAAGCTACTGAAACTTCCAAAGCTTTCT
CATTCAACGAAGTTAGTTCAATACGTAAAAGTAGTAGCAAAGTTACCTGT
TGTCATTTCTCTTCAGATGGAAAGTTATTGGCCAGTGCTGGGCATGACAA
GAAGGTATAATCCATTTTAGTGTTGCTAGGAATAAAATATTTTTATGAAG
CCTCCGCAATAGGGAAAATATTGATGTTGCTATAGCGCTGATGATTCGCT
TTGTTAATCTCGATCTCCAAACATAAAACTCTTAAAATAATGTTTTCAAA
TTGTTAAATGTTATAAAATTTGATTGTTTGTAAAAAAAAAAAAAAAAAAA
AAA
back to top