FC873162

Overview
NameFC873162
Unique NameFC873162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length155
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1076 contig Ccv1_Contig1076:2..156. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_ZANAE (Superoxide dismutase [Cu-Zn], chloroplastic OS=Zantedeschia aethiopica GN=SODCP PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.081e-12
Identity = 35/39 (89.74%), Postives = 35/39 (89.74%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            AFVV ELEDDL K GHELSLTTGNA GRLACGVVGLTPV
Sbjct:  178 AFVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPV 216          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            A VV ELEDDL K GHELSLTTGNA GRLACGVVGLTP+
Sbjct:  174 ALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 212          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_SOLLC (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solanum lycopersicum GN=SODCP.2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            A VV ELEDDL K GHELSLTTGNA GRLACGVVGLTP+
Sbjct:  179 ALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 217          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            A VV ELEDDL K GHELSLTTGNA GRLACGVVGLTP+
Sbjct:  103 ALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 141          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_PETHY (Superoxide dismutase [Cu-Zn], chloroplastic OS=Petunia hybrida GN=SODCP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            A VV ELEDDL K GHELSLTTGNA GRLACGVVGLTP+
Sbjct:  181 ALVVHELEDDLGKGGHELSLTTGNAGGRLACGVVGLTPI 219          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_ORYSJ (Superoxide dismutase [Cu-Zn], chloroplastic OS=Oryza sativa subsp. japonica GN=SODCP PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            AFVV ELEDDL K GHELSL+TGNA GRLACGVVGLTP+
Sbjct:  173 AFVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 211          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_ARATH (Superoxide dismutase [Cu-Zn], chloroplastic OS=Arabidopsis thaliana GN=SODCP PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            AFVV EL+DDL K GHELSLTTGNA GRLACGV+GLTP+
Sbjct:  178 AFVVHELKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_SOLCS (Superoxide dismutase [Cu-Zn], chloroplastic OS=Solidago canadensis var. scabra GN=SODCP PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.449e-11
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            AFVV EL DDL K GHELSL+TGNA GRLACGVVGLTPV
Sbjct:  182 AFVVHELADDLGKGGHELSLSTGNAGGRLACGVVGLTPV 220          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.449e-11
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            A VV ELEDDL K GHELSL+TGNA GRLACGVVGLTPV
Sbjct:  164 ALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV 202          
BLAST of FC873162 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.912e-11
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2
Query:    2 AFVVLELEDDLEKSGHELSLTTGNARGRLACGVVGLTPV 118
            A VV ELEDDL K GHELS TTGNA GRLACGVVGLTPV
Sbjct:  184 ALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGLTPV 222          
The following BLAST results are available for this feature:
BLAST of FC873162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SODCP_ZANAE3.081e-1289.74Superoxide dismutase [Cu-Zn], chloroplastic OS=Zan... [more]
SODCP_VITVI1.997e-1184.62Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]
SODCP_SOLLC1.997e-1184.62Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_PINSY1.997e-1184.62Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_PETHY1.997e-1184.62Superoxide dismutase [Cu-Zn], chloroplastic OS=Pet... [more]
SODCP_ORYSJ1.997e-1184.62Superoxide dismutase [Cu-Zn], chloroplastic OS=Ory... [more]
SODCP_ARATH2.608e-1182.05Superoxide dismutase [Cu-Zn], chloroplastic OS=Ara... [more]
SODCP_SOLCS4.449e-1184.62Superoxide dismutase [Cu-Zn], chloroplastic OS=Sol... [more]
SODCP_MEDSA4.449e-1184.62Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_SPIOL9.912e-1184.62Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1AD08FM2 AbsDev Citrus clementina cDNA clone KN0AAI1AD08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873162 ID=FC873162; Name=FC873162; organism=Citrus clementina; type=EST; length=155bp
AGCCTTTGTGGTTCTTGAGCTTGAGGATGACCTTGAAAAAAGTGGGCATG
AACTTAGTCTAACCACTGGTAATGCACGTGGAAGACTGGCTTGCGGTGTC
GTTGGCTTGACTCCAGTATGACATCCCCAAAACCCGCTGTGGTTGCACTA
TTTGC
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