FC873168

Overview
NameFC873168
Unique NameFC873168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14150 contig Ccv1_Contig14150:632..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.469e-35
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  190 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 2.469e-35
Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.224e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  174 FDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.211e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  135 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.211e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  184 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.500e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.183e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.183e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.183e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of FC873168 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.183e-35
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 2
Query:    2 FDPLVLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 217
            FDPL LA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of FC873168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB22_ORYSJ2.469e-3598.61Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ORYSJ2.469e-3598.61Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_SOYBN3.224e-3597.22Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB22_CUCSA4.211e-3597.22Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA4.211e-3597.22Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_PETSP5.500e-3597.22Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC7.183e-3597.22Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC7.183e-3597.22Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP7.183e-3597.22Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL7.183e-3597.22Chlorophyll a-b binding protein C, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DB02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DB02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873168 ID=FC873168; Name=FC873168; organism=Citrus clementina; type=EST; length=459bp
CTTTGATCCATTGGTTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGT
TTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGC
CGACCACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCA
ACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAA
ATTGGAATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCA
AAACATGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGT
ATTTTCATTCAATCTCTTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCT
TACAGGTTGTGCCAGAATCTAGTTACAAGTTTACATCAAAAAAAAAAAAA
AAAAAAAAA
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