FC873169

Overview
NameFC873169
Unique NameFC873169
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1191 contig Ccv1_Contig1191:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873169 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 57/126 (45.24%), Postives = 76/126 (60.32%), Query Frame = -3 
Query:  224 SSRLALPGPEEKAIVSANENRTNTQNPAMMINQLPLPLTHATDLPVGKLEIAVNNCXXXXXXXXXXXXECVQVSENDIEDTFC-EDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVAL 598
            S+RLALP PEE+++ SA         P + I  + LPL     L  G       NC            EC +++E+DIED +  EDP+EIPTIKLN+++F  TL+ +M+ N+ELQEGDMSKALVAL
Sbjct: 1654 SARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLPLEKSLASGAPSNR-ENCEPIIEEPASPGQECTEITESDIEDAYYNEDPDEIPTIKLNIEQFGMTLREHMERNMELQEGDMSKALVAL 1778
[Close]
BLAST of FC873169 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.720e-12
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = -3 
Query:  209 QVSENDIEDTFCEDPEEIPTIKLNMKEFTQTLQNYMQENLELQEGDMSKALVALTVGAA 385
            +VS  DIE+ F EDPEEIPTI+LNM  FT  L+  M+ N ELQ+G+MS ALVALT   A
Sbjct: 1128 EVSIADIEEAFFEDPEEIPTIRLNMDAFTSNLKKIMEHNKELQDGNMSSALVALTAETA 1186
The following BLAST results are available for this feature:
BLAST of FC873169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DME_ARATH4.709e-2045.24Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH4.720e-1261.02Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2DB03FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DB03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873169 ID=FC873169; Name=FC873169; organism=Citrus clementina; type=EST; length=726bp
CACCACACCAGTATTCAAATTCAAAGCTATGTTCTTACTTCATCATCAGC
ATTTTCAGATTTAATTTTACCCCTCACATTCACAGATACCTTCTTGCTCT
CTTCATCGTAATACTCCATCGATGATATTTTGAGCCAAGTTCACATTAAA
CAATTCCTAGGAAGCTGAAAGGATCGGTTATATATTGTTCACAGCACAAA
ATTCTCAATGCTGCTCCCACTGTTAAAGCAACTAAAGCTTTGGACATATC
ACCTTCTTGAAGCTCCAAATTCTCTTGCATATAATTCTGTAAGGTCTGAG
TGAACTCTTTCATGTTAAGCTTGATAGTAGGAATCTCTTCTGGATCTTCA
CAGAATGTATCTTCGATGTCATTTTCTGATACTTGTACACACTCTGGTTC
TGGTGTCGCTGGCTCTTCAATGATAGGCTCACAGTTATTAACAGCAATTT
CTAATTTTCCGACTGGTAGATCGGTTGCATGAGTTAGAGGAAGAGGTAGT
TGATTGATCATCATTGCAGGATTTTGGGTATTTGTTCTATTTTCATTTGC
ACTCACTATTGCTTTCTCCTCCGGCCCTGGAAGTGCAAGTCTTGAGCTGT
ATATGAAATGATTTCTGAGTCAACTTATCAGATTTTACTAATTGTATGCC
AGGTAGGTCTTAGTTCACACTATAATCATGGAAGAGGTTTTCATAACCTT
ATCTATGAAAAGGTTCTCTTAGATAC
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