FC873239

Overview
NameFC873239
Unique NameFC873239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig429 contig Ccv1_Contig429:13..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.367e-70
Identity = 130/169 (76.92%), Postives = 147/169 (86.98%), Query Frame = 1
Query:   49 MVQTLAMPVAPALSVICNGHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            M Q +AMPVA +LS+ICN   +N L+  +L+ P S  P    LSI+CARVGGVEIP NKRIEYSLQYIHG+GRTRARQILVDL+MENKITKDM+EEELI +RDEVSKYMIEGDLRRFNALAI+RLKEIQCYRG+RHIQGLPCRGQ TKNNCRTLKGK++AIAGKKK  +
Sbjct:    1 MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKKVSK 169          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.521e-32
Identity = 69/151 (45.70%), Postives = 97/151 (64.24%), Query Frame = 1
Query:  103 GHNNNLLTNASLSFPVSKQPQYPGLSIQCARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            G   +  T   +S  + +   + GL +Q  RVG  E+PNNK ++  LQ ++G+GR ++ Q+L  L + NK+ +D++ +ELI +R+EV ++    +LRR     I+RL E+ CYRG RH  GLPCRGQ T  N RT KGK VAIAGKKKAPR
Sbjct:    3 GLRRSATTLFDISQSLLRNVTFHGLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_MYCGA (30S ribosomal protein S13 OS=Mycoplasma gallisepticum GN=rpsM PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 8.967e-30
Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKME-NKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            AR+ G++IPNNKR+E SL YI+G+G+ RA++IL   K++ NK  KD+S+EEL  IR   S Y++EGDLRR  AL I+RL E+  Y G+RH +GLP RGQ TK+N RT KG R  +A KK
Sbjct:    2 ARILGIDIPNNKRVEISLTYIYGIGKPRAQEILRKAKIDFNKRVKDLSDEELALIRSVASTYVLEGDLRRDVALNIKRLMEVGSYAGLRHRRGLPVRGQRTKSNARTRKGPRKTVANKK 120          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_MYCAP (30S ribosomal protein S13 OS=Mycoplasma agalactiae (strain PG2) GN=rpsM PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.967e-30
Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            AR+  +EIPNNKR+  SL YI+G+GRT A++I    K++  I  KD+SE +L  IR+   +Y+ EGDLRR  +L I+RL E++CYRGIRH +GLP RGQ TK+N RT KG R  +AGKK
Sbjct:    2 ARILNIEIPNNKRVVISLTYIYGIGRTSAQEICAKAKIDENIRVKDLSEAQLSAIREIAKEYVTEGDLRREVSLNIKRLMEVKCYRGIRHRKGLPVRGQSTKSNARTRKGPRKTVAGKK 120          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.998e-29
Identity = 66/124 (53.23%), Postives = 91/124 (73.39%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKAPR 555
            AR+ GV IP+NKR+  SL+YI+G+G  +AR+I   L++ E+K    +SE+E++ IR+ + + Y +EGDLRR  A+ I+RL ++ CYRG+RH +GLP RGQ T  N RT KGK VAIAGKKKA R
Sbjct:    2 ARIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDRDYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNARTRKGKAVAIAGKKKATR 125          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_PEDPA (30S ribosomal protein S13 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsM PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.407e-29
Identity = 64/120 (53.33%), Postives = 88/120 (73.33%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKK 546
            AR+ GV++P +KRI   L YI G+G T A++IL D ++   I  +D++ ++   IR EV  Y++EGDLRR  +L I+RL+EI  YRG+RH +GLP RGQHTKNN RT KGK+V+IAG+KK
Sbjct:    2 ARIAGVDLPRDKRIVIGLTYIFGIGNTTAQKILKDAEVSEDIRVRDLTADQEDKIRAEVDNYLVEGDLRRTVSLNIKRLQEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKKVSIAGRKK 121          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29
Identity = 71/119 (59.66%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            ARV  VEIPN KR   SL YI G+G+T A QIL D  + ENK  + +SEEEL  IR+E  KY+ EGDLRR   L I+RL EI+ YRGIRH +GLP RGQ T+ N RT KG R  IAGKK
Sbjct:    2 ARVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKKYVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNARTRKGPRKTIAGKK 120          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_ACHLI (30S ribosomal protein S13 OS=Acholeplasma laidlawii (strain PG-8A) GN=rpsM PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.914e-29
Identity = 63/121 (52.07%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKKKA 549
            AR+ GV+IP  KR+  SLQYI+G+G+T A+++L +  +   I  KD+++++L  IR EV+K + EGDLRR + L I+RL EI  YRGIRH +GLP  GQ+T+NN RT KGK  A+ GKK+A
Sbjct:    2 ARIAGVDIPTQKRVVISLQYIYGIGQTTAQEVLKNANVSEDIRVKDLNDDQLSAIRGEVAKIVTEGDLRRESTLNIKRLMEIGSYRGIRHRKGLPVNGQNTRNNARTRKGKPKAVTGKKQA 122          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_MYCPE (30S ribosomal protein S13 OS=Mycoplasma penetrans GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 68/119 (57.14%), Postives = 85/119 (71.43%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKM-ENKITKDMSEEELITIRDEVSKYMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKRVAIAGKK 543
            AR+ GV+IPNNKR+  SL YI G+G++R+++IL   K+ ENK    +SEEEL TIR   S+Y+IEGDLRR  A+ I+RL EI  YRGIRH + LP RGQ TK N RT KG R  +A KK
Sbjct:    2 ARILGVDIPNNKRVVISLTYIFGIGKSRSQEILSKAKIDENKKVSALSEEELATIRKIASEYVIEGDLRREVAMNIKRLMEIGSYRGIRHRRNLPVRGQRTKCNARTRKGPRKTVANKK 120          
BLAST of FC873239 vs. ExPASy Swiss-Prot
Match: RS13_HERA2 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsM PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.691e-28
Identity = 65/125 (52.00%), Postives = 89/125 (71.20%), Query Frame = 1
Query:  190 ARVGGVEIPNNKRIEYSLQYIHGVGRTRARQILVDLKMENKI-TKDMSEEELITIRDEVSK-YMIEGDLRRFNALAIRRLKEIQCYRGIRHIQGLPCRGQHTKNNCRTLKGKR-VAIAGKKKAPR 555
            AR+ GV+IP NKR+E SL YI+G+GRT + +IL    +   +  KD++E+E+I +R+ + + Y +EGDLRR   L I+RL +I CYRGIRH +GLP RGQ TK N RT +GK+  AI GKKKA +
Sbjct:    2 ARISGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDYTVEGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKATK 126          
The following BLAST results are available for this feature:
BLAST of FC873239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR13_ARATH1.367e-7076.9230S ribosomal protein S13, chloroplastic OS=Arabid... [more]
RT13_ARATH2.521e-3245.70Small ribosomal subunit protein S13, mitochondrial... [more]
RS13_MYCGA8.967e-3055.4630S ribosomal protein S13 OS=Mycoplasma gallisepti... [more]
RS13_MYCAP8.967e-3054.6230S ribosomal protein S13 OS=Mycoplasma agalactiae... [more]
RS13_ACICJ1.998e-2953.2330S ribosomal protein S13 OS=Acidiphilium cryptum ... [more]
RS13_PEDPA3.407e-2953.3330S ribosomal protein S13 OS=Pediococcus pentosace... [more]
RS13_MYCA59.914e-2959.6630S ribosomal protein S13 OS=Mycoplasma arthritidi... [more]
RS13_ACHLI9.914e-2952.0730S ribosomal protein S13 OS=Acholeplasma laidlawi... [more]
RS13_MYCPE1.691e-2857.1430S ribosomal protein S13 OS=Mycoplasma penetrans ... [more]
RS13_HERA21.691e-2852.0030S ribosomal protein S13 OS=Herpetosiphon auranti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF07FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873239 ID=FC873239; Name=FC873239; organism=Citrus clementina; type=EST; length=743bp
CACCATTCCGTTTGGTTTCCGAGAAAACAAAAGAAACCAAAAGAGAAAAT
GGTACAAACACTTGCAATGCCTGTCGCTCCGGCGCTCTCCGTTATCTGCA
ACGGACATAACAATAATCTTCTCACCAACGCTTCCCTGTCTTTCCCTGTT
TCCAAGCAGCCTCAGTATCCCGGTCTGAGCATTCAATGTGCTCGTGTTGG
AGGTGTCGAGATTCCAAATAACAAGCGGATTGAGTACTCGCTTCAGTATA
TTCATGGAGTTGGGCGCACAAGAGCTCGCCAAATCCTCGTTGATCTCAAA
ATGGAGAACAAAATCACCAAAGACATGTCTGAGGAAGAGCTCATTACAAT
TCGTGACGAAGTCTCCAAATACATGATTGAAGGAGATTTGAGGCGGTTCA
ATGCACTTGCTATTAGGAGATTGAAGGAGATTCAATGCTACCGCGGAATT
CGCCATATTCAGGGCTTGCCATGTAGAGGGCAGCACACAAAGAACAATTG
TCGCACATTGAAGGGTAAGAGGGTTGCTATTGCTGGGAAAAAGAAAGCCC
CTCGTTAATTAAATGACTTTTTTCCTGTTTATTTAATGGATAGGGTTGAT
TTTCTATTGTATTGAATTTGAATGTGAATCATTTTGACTACAAGCTTGGT
TGCTTTCGATTCTGCCGGAGCTTTTGATGTATATGTTTTACTTTTCTTTT
ATGCATTGCATTGATGTTGTGTTTTAAAAAAAAAAAAAAAAAA
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