FC873241

Overview
NameFC873241
Unique NameFC873241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15349 contig Ccv1_Contig15349:527..1080. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.821e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  317 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.821e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.821e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.821e-28
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  322 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 381
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.285e-28
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  298 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.400e-27
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.119e-27
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.119e-27
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of FC873241 vs. ExPASy Swiss-Prot
Match: ACT4_ARATH (Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.119e-27
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 180
            EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of FC873241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
ACT3_SOYBN2.821e-28100.00Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT3_ORYSJ2.821e-28100.00Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI2.821e-28100.00Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_DAUCA2.821e-28100.00Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACT13_SOLTU6.285e-2898.33Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU6.285e-2898.33Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
ACT7_ARATH1.400e-2798.33Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT_GOSHI3.119e-2796.67Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT_COLSC3.119e-2796.67Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT4_ARATH3.119e-2796.67Actin-4 OS=Arabidopsis thaliana GN=ACT4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DF09FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873241 ID=FC873241; Name=FC873241; organism=Citrus clementina; type=EST; length=556bp
GAAATCACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCC
ACCAGAGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTGCATCCC
TCAGCACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCT
GGTCCATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGA
TGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTTTTTGTGTCTCGTTTCGC
GAACTCAAGTTGGTTGACATGGAGAAGTGCTAAGGTTGGGGCCATTGAAG
GAGGCATATCTCGATATTGATGTTATTATACAAGCTTCTTACAGCGTTTG
AGGGGGGCTTATTTCTGTACTCAACCGTCTTCCTTGCCTTGCATTCATCT
GGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCCTTTTTTTTTTTTTTAAA
GTAGGATGTTTGTAGCTGGAGATGAAGAGTGGTTGTGATGCTTTTCTATT
TCATTTTCTAAATTTTCATATTTGAAGGTTTTTTTTCAAAAAAAAAAAAA
AAAAAA
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