FC873254

Overview
NameFC873254
Unique NameFC873254
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6528 contig Ccv1_Contig6528:11..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873254 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.091e-11
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 3 
Query:  387 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXXXXXXXXV-TCGKTPPAGFTC 626
            ID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L+AA+                        +  CGK PP  F C
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343
The following BLAST results are available for this feature:
BLAST of FC873254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC3.091e-1143.2136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2DH02FM1 AbsDev Citrus clementina cDNA clone KN0AAI2DH02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873254 ID=FC873254; Name=FC873254; organism=Citrus clementina; type=EST; length=859bp
CTACAACAGAAAGAAGAGAGATTTAAAATAAAGAAAAAAAAAAAAAAATG
GACTCCTCCAAACTCTCAGCTCTCCTCATCATTTGCATGCTTTTCATCTC
CACAGCCACTCCCATTCTTGGCTGTGGCACGTGTGGCAAGCCGCACCCGA
AGCACAGGAAACCTAGGCAGCCTAGACCCATCGGTCTTCCTCCCATTGTC
AAACCCCCAGTTCCCTTGCCACCAGTCACTCTCCCTCCGGTGACCGTCCC
GCCGATCAAGCCACCAGTCGACCTCCCCACTCTCCCACCAGTTGCACTGC
CTCCAGTTCTCCCTAATCCACCAAGTGCTAGGAAGCCATGCCCATGTTCA
TACACACCACCTCCACCAGCGGCTGCCACATGCCCCATTGACACCCTCAA
ATTGGGTGCTTGTGTGGACCTTCTTGGTGGGTTGGTTCACATTGGTCTTG
GTGACCCAGTTGTTAACCAATGCTGCCCAGTTCTACAAGGACTTGTTGAG
TTAGAAGCTGCTGTCTGCTTGTGCACTACTCTCAAGCTCAAGCTGCTTAA
TCTTAACATCTATCTTCCACTTGCTCTTCAGCTTCTTGTCACTTGCGGAA
AGACACCACCCGCTGGTTTCACTTGCACTCTTTAGATCTAAGGTTGGTAG
ATTGATGATGGATACTGAAGGAAGAAATCGACATGAAAGGATGTCGAGAC
TTATTTGTTTGTTTCTTTTTCTCTCTCCCCCACTCTCTCTGTGTTTCTCT
CATTGTTGGGATTGTAATGTTTGGTCACATTTAATTGTACACCCATTTGT
TTTTATATGATTTGTCCCATTGTATGTGTGTTTTCAATGTCCTTTGACAA
GCAGCAATT
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