FC873276

Overview
NameFC873276
Unique NameFC873276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11747 contig Ccv1_Contig11747:603..1434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 432.95 bits (1112), Expect = 1.025e-120
Identity = 206/245 (84.08%), Postives = 227/245 (92.65%), Query Frame = 2
Query:    5 VSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQALHAI 739
            VSLFFTESPTNPFLRCVD++LVS +CHK+G +VCIDGTFATPLNQKAL+LGADLV+HSATK+IGGHNDVLAGCI GS KLV++IRNLHHVLGG LNPNAAYLIIRGMKTLHLRVQQQNSTA RMA+ILEAHPKV  V+YPGL SHPEH +A +QMTGFGGVVSFE+DGD+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMSYWDL Q ERLKYGI DNLVRFSFGV+DFED+ AD+LQAL AI
Sbjct:  319 VSLFFTESPTNPFLRCVDIELVSKICHKRGTLVCIDGTFATPLNQKALALGADLVVHSATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVLGGTLNPNAAYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADILQALEAI 563          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.571e-55
Identity = 101/241 (41.91%), Postives = 157/241 (65.15%), Query Frame = 2
Query:   11 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQAL 730
            L + E+PTNP L+  D+K V+D  H +GA + +D TF +P  Q  L LGAD+V+HS TK+I GH+D + G ++  +++L  +++ L + +G   +P   +L +RG+KTLH+R++     A  +   LE HPKV+RV YPGL SHP+H I  +QM G+GG+V F V G +  +  F++ +K+  +A S GG ES+++ P++M++  +   ER K GI D L+R S G++D  DL AD+ QAL
Sbjct:  144 LVWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYINGHSDCVMGVLATNNDELYAKLKFLQNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQAL 384          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.360e-53
Identity = 99/242 (40.91%), Postives = 160/242 (66.12%), Query Frame = 2
Query:   11 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGC--ISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQAL 730
            + + ESP+NP L+ VD+  ++++  +K  I   D TFATP+ Q+ L LG D+V HSATK++ GH+D++ G   +  ++ L  Q++ L + +G    P  +++++RG+KTL +R+++    A+++A+ LE HPKVKRV+YPGL SHP+H IA +QM  FGG++S E+  DL  T K ++  ++  +A S GG ES+++ PAIM++  + Q+ER K GI D  +R S G++   DL  D+  AL
Sbjct:  146 MLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSATKYLNGHSDIIGGVAVVGDNKTLAEQLKYLQNAIGAIAAPFDSFMVLRGLKTLAIRMERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRYFGGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLRHDLEAAL 387          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.926e-52
Identity = 102/247 (41.30%), Postives = 159/247 (64.37%), Query Frame = 2
Query:    2 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAG-CISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQALHAI 739
            N    + E+PTNP L+  D+ L++D+  K G ++ +D TF TP  Q+ L+LGAD+VLHSATK++GGH+DV+ G  ++ S++L  ++  + +  GG L P  ++L++RG+KTL LR++  +  A ++A  LE HP V+ ++YPG  +HP H +A  Q  GFGG++SF++ G       F+  LK+  IA S G  ES++  PA M++  + +  RL+ GI D L+R S G++D EDL  D+ QAL  I
Sbjct:  134 NTKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFVQNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDI-GSEERVDAFLGNLKLFTIAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQALENI 379          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.320e-51
Identity = 97/246 (39.43%), Postives = 157/246 (63.82%), Query Frame = 2
Query:    2 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQALHAI 739
            N  LFF ESP+NP    VD+  ++++ H KGA++ +D  F TP  Q+ L LGAD+V+HSATK+I G    + G ++G  + + ++       G  L+P  A+L ++G++TL +R+Q  +++AL +A+ LE  P ++RV+Y GL SHP+H +A +Q +GFG VVSF+V G   A  +FIDA ++  I  + G  ++ +  PA  S+  LS  +R + GI D+L+R + G++D +DL AD+ + L A+
Sbjct:  158 NTKLFFVESPSNPLAELVDIAALAEIAHAKGALLAVDNCFCTPALQQPLKLGADVVIHSATKYIDGQGRGMGGVVAGRGEQMKEVVGFLRTAGPTLSPFNAWLFLKGLETLRIRMQAHSASALALAEWLERQPGIERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKADMARGLAAL 403          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.320e-51
Identity = 101/239 (42.26%), Postives = 161/239 (67.36%), Query Frame = 2
Query:   17 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQAL 730
            + E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG ++  S++L ++I  L + +G  L P  ++L+ RG+KTL LR++  ++ A ++A+ LE    V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S GV+  EDL  D+ +AL
Sbjct:  140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEAL 377          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.320e-51
Identity = 101/239 (42.26%), Postives = 161/239 (67.36%), Query Frame = 2
Query:   17 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQAL 730
            + E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG ++  S++L ++I  L + +G  L P  ++L+ RG+KTL LR++  ++ A ++A+ LE    V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S GV+  EDL  D+ +AL
Sbjct:  140 YFETPSNPLLKVLDIKEISAIAKAHDALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSKELASEIGFLQNSIGAVLGPQDSWLVQRGIKTLALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDIKEAL 377          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 2.252e-51
Identity = 105/244 (43.03%), Postives = 158/244 (64.75%), Query Frame = 2
Query:   11 LFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCISGSEKLVTQIR--NLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQALHA 736
            + + ESP NP +   D+  V+ +  K GA V +D T+ TP  Q+ L LGADLV+HSATK++ GH D+ AG + GS+ LV +IR   L  + G  L+P+ A L++RG+KTL+LR+ +  + A  +A+ L   P+V+ +HYPGL S P++ +A QQM+  GG+++FE+ G + A  +F++AL++   A S G  ES+   PA M++   +  ER  YGI + LVR S G++D +DL ADV QAL A
Sbjct:  153 VIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKA 396          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.490e-50
Identity = 100/239 (41.84%), Postives = 159/239 (66.53%), Query Frame = 2
Query:   17 FTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCI-SGSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQAL 730
            + E+P+NP L+ +D+K +S +     A+  +D TFATP  Q+ ++LGAD+VLHSATK++GGH+DV+AG + + S +L  +I  L + +G  L P  ++L+ RG+KTL  R++  ++ A ++A+ LEA   V +V+YPGL +H  H IA +QMT FGG++SFE+  D  A   F++ L+   +A S GG ES+++ PA+M++  + +  R + GI D L+R S GV+  EDL  D+ +AL
Sbjct:  140 YFETPSNPLLKVLDIKEISSIAKAHNALTLVDNTFATPYLQQPIALGADIVLHSATKYLGGHSDVVAGLVTTNSNELAIEIGFLQNSIGAVLGPQDSWLVQRGIKTLAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELT-DENAVKNFVENLRYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDLKEAL 377          
BLAST of FC873276 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.490e-50
Identity = 101/247 (40.89%), Postives = 155/247 (62.75%), Query Frame = 2
Query:    2 NVSLFFTESPTNPFLRCVDVKLVSDLCHKKGAIVCIDGTFATPLNQKALSLGADLVLHSATKFIGGHNDVLAGCIS-GSEKLVTQIRNLHHVLGGALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAKILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVQDFEDLNADVLQALHAI 739
            N    + E+P+NP L+  D+   + +    G +  +D TFATP  Q  L LGAD+V HS TK++GGH+DV+AG ++  +E L  +I    + +GG L P  ++L+ RG+KTL LR++     AL +A+ LE HPKV+RV+YPGL +HP + +A +QM GF G++SF +  D  A + F+++LK+  +  S GG ES+V  PA M++  + +++R   GI D LVR S G++  +DL  D+ QA   I
Sbjct:  134 NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPLLLGADIVAHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDLEQAFAKI 379          
The following BLAST results are available for this feature:
BLAST of FC873276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
METB_ARATH1.025e-12084.08Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
CGL_DICDI2.571e-5541.91Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
METC_COXBU5.360e-5340.91Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
MCCB_BACSU5.926e-5241.30Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
METZ_PSEAE1.320e-5139.43O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
METC_LACLM1.320e-5142.26Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA1.320e-5142.26Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
MEGL_PSEPU2.252e-5143.03Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METC_LACLC2.490e-5041.84Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METB_HELPY2.490e-5040.89Cystathionine gamma-synthase OS=Helicobacter pylor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BB05FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BB05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873276 ID=FC873276; Name=FC873276; organism=Citrus clementina; type=EST; length=832bp
CAATGTCTCACTATTCTTCACCGAGTCTCCAACCAATCCATTCCTGAGAT
GTGTGGATGTCAAACTGGTTTCAGATCTTTGCCATAAGAAAGGAGCAATA
GTTTGCATAGATGGAACCTTTGCCACACCTCTCAATCAGAAGGCCCTCAG
CCTTGGTGCTGATCTTGTACTGCACTCTGCAACAAAATTCATTGGTGGCC
ACAATGATGTCCTTGCTGGGTGCATTAGTGGTTCAGAGAAGTTAGTTACA
CAAATTCGTAATTTGCATCATGTTTTGGGTGGTGCTCTCAACCCGAATGC
CGCGTATTTGATCATTCGAGGCATGAAGACATTGCATCTTCGTGTACAGC
AACAAAATTCAACTGCGTTGAGGATGGCCAAGATTTTAGAGGCACATCCA
AAGGTGAAGCGCGTTCACTATCCAGGCTTGAAGAGTCATCCTGAGCATCA
CATTGCCACACAGCAAATGACTGGTTTTGGTGGGGTAGTTAGTTTTGAGG
TTGATGGAGACCTAACGGCCACCATAAAATTTATTGATGCCTTGAAAATC
CCATATATTGCTCCATCCTTCGGTGGCTGTGAGAGCATTGTTGATCAGCC
AGCTATAATGTCGTATTGGGACCTTAGCCAATCGGAGAGGCTCAAGTATG
GGATTATGGATAACTTGGTTCGCTTTAGCTTTGGAGTGCAAGATTTTGAA
GATTTGAATGCTGATGTACTTCAGGCCCTGCACGCCATATAGAAGTGTTT
TTTGTGTTTCACCTTCGCAAATTTTTCATTTTACTTTTCCTAACGGCATT
CTCCTTTGATGTTTGAATATGTTCGTTTTGTT
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