FC873277

Overview
NameFC873277
Unique NameFC873277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length766
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.912e-62
Identity = 92/137 (67.15%), Postives = 105/137 (76.64%), Query Frame = 3
Query:   15 LVLVAIILDCFAYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +    +   C       D QGDALFALR SLR   NQL DWNQNQVNPCTWS VICD+ N V S+TLS MNFSGTLS R+G+L  L TLTLKGNGITGEIPE+ GNL+SLTSLDLE+N+L G+IP ++GNLKKLQFL
Sbjct:   11 MAFTLLFFACLCSFVSPDAQGDALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFL 147          

HSP 2 Score: 70.8626 bits (172), Expect = 1.912e-62
Identity = 35/76 (46.05%), Postives = 40/76 (52.63%), Query Frame = 1
Query:  535 TLSQNNFSGTIPXXXXXXXXXXXXXXXXXXXXGQIPVHLFQIPKYNFTGNNLNCGKTLPHSCESSTNDSGSSKNPR 762
            TLS+N  +GTIP                    GQIP  LF+IPKYNFT NNLNCG   PH C S+   SG S  P+
Sbjct:  148 TLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQSLFEIPKYNFTSNNLNCGGRQPHPCVSAVAHSGDSSKPK 223          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.780e-28
Identity = 68/141 (48.23%), Postives = 89/141 (63.12%), Query Frame = 3
Query:    9 VKLVLVAIIL--DCFAYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            V  +L+++IL  +   +LA ++ +GDAL  LR +L  PNN L+ W+   VNPCTW +V C+N N+V  V L +   SG L P +GVL+ L  L L  N ITG IP  LGNL++L SLDL  N   G IP SLG L KL+FL
Sbjct:    6 VVFILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFL 146          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.036e-28
Identity = 63/125 (50.40%), Postives = 83/125 (66.40%), Query Frame = 3
Query:   51 YLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +LA S+ +GDAL +LR +L  PNN L+ W+   VNPCTW +V C+N N+V  V L + + SG L P++G L+ L  L L  N ITG +P +LGNL++L SLDL  N   G IP SLG L KL+FL
Sbjct:   25 WLASSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFL 149          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.276e-26
Identity = 65/141 (46.10%), Postives = 85/141 (60.28%), Query Frame = 3
Query:   30 IILDCFAYLAL---------SDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +++ CF +L L          + +GDAL AL+ SL  PN  L+ W+   V PCTW +V C++ N+V  V L + N SG L  ++G L  L  L L  N ITG IPE+LGNL+ L SLDL  N L G IP +LG LKKL+FL
Sbjct:    5 LMIPCFFWLILVLDLVLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFL 145          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.474e-24
Identity = 62/121 (51.24%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   72 QGDALFALRTSLRV---PNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            Q DAL ALR+SL      NN L+ WN   V PC+W +V C+  N+V  + L S N SG L P++  L  L  L L  N ITGEIPEELG+L  L SLDL  N + G IP SLG L KL+FL
Sbjct:   27 QVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFL 147          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.011e-23
Identity = 65/140 (46.43%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   42 CFAYLAL---------SDYQGDALFALRTSLRV---PNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            CF YL L          + +GDAL  L+ SL      NN L+ W+   V PCTW +V C+  N V  V L +   SG L P +G L  L  L L  N ITGEIPEELG+L  L SLDL  N + G IP SLG L KL+FL
Sbjct:   13 CFLYLLLLFNFTLRVAGNAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFL 152          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 3
Query:   45 FAYLALSDYQGDALFALRTSLRVPNNQLRDWNQ-NQVNPCTWSNVICDN-SNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            F   +  + +G AL A++ S     N L DW+  +  + C+W  V CDN S +V S+ LSS+N  G +SP IG LR L ++ L+GN + G+IP+E+GN +SL  LDL  N L G IP S+  LK+L+ L
Sbjct:   20 FGVASAMNNEGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETL 148          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.784e-20
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   66 DYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +Y+  AL +++  ++     L  W+ N V+PCTW+ V C +   V S+ ++S   SG LS  IG L  L TL L+ N +TG IP ELG LS L +LDL  NR  G+IP SLG L  L +L
Sbjct:   37 NYEVAALMSVKNKMKDEKEVLSGWDINSVDPCTWNMVGCSSEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYL 156          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.510e-19
Identity = 51/144 (35.42%), Postives = 84/144 (58.33%), Query Frame = 3
Query:    6 SVKLVLVAIILDCFAYLALSDY----QGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            ++K+  V ++L  F   +LS      + +AL  ++  L  P+   ++W++  V+PC+W+ + C + N V  +   S + SGTLS  IG L  L  ++L+ N I+G+IP E+ +L  L +LDL NNR  G+IP S+  L  LQ+L
Sbjct:    8 TMKIFSVLLLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYL 151          
BLAST of FC873277 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.576e-19
Identity = 51/139 (36.69%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   15 LVLVAIILDCFAYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNP-CTWSNVICDNSN-NVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +VL+  +        ++  +G  L  ++ S +  NN L DW  +  +  C W  V C+N   NV ++ LS +N  G +SP IG L++L ++ L+GN ++G+IP+E+G+ SSL +LDL  N L G IP S+  LK+L+ L
Sbjct:    7 IVLLGFLFCLSLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQL 145          
The following BLAST results are available for this feature:
BLAST of FC873277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
Y5129_ARATH1.912e-6267.15Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH1.780e-2848.23Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK2_ARATH3.036e-2850.40Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
BAK1_ARATH1.276e-2646.10BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK5_ARATH3.474e-2451.24Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH1.011e-2346.43Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
ERL1_ARATH4.695e-2142.64LRR receptor-like serine/threonine-protein kinase ... [more]
Y5457_ARATH1.784e-2043.33Probable LRR receptor-like serine/threonine-protei... [more]
Y2239_ARATH1.510e-1935.42Probable LRR receptor-like serine/threonine-protei... [more]
ERECT_ARATH2.576e-1936.69LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BB07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BB07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873277 ID=FC873277; Name=FC873277; organism=Citrus clementina; type=EST; length=766bp
TGAATAGCGTGAAGTTGGTCCTTGTTGCTATAATATTGGATTGCTTCGCT
TATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGAC
TTCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAG
TTAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTT
GCCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAG
AATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCA
TAACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGC
TTGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGG
CAATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTT
TAGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAA
AAAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACA
ATTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATC
AGTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTT
GTTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTA
AAACTCTTCCACATTCTTGTGAATCTAGTACCAATGATTCAGGGAGTTCA
AAAAACCCAAGATTGG
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