FC873281

Overview
NameFC873281
Unique NameFC873281
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14880 contig Ccv1_Contig14880:595..1146. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 3.084e-88
Identity = 158/183 (86.34%), Postives = 164/183 (89.62%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R ATG GVMMNDRKSRFSING+PIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV TGLGAVWNTAKVE GSIVA+FGLGTV             SR+IGIDID KKFD AKNFGVTEFVNPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAA
Sbjct:  119 RAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAA 301          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 3.084e-88
Identity = 158/183 (86.34%), Postives = 164/183 (89.62%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R ATG GVMMNDRKSRFSING+PIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGV TGLGAVWNTAKVE GSIVA+FGLGTV             SR+IGIDID KKFD AKNFGVTEFVNPKDHDKPIQQV+VDLTDGGVDYSFECIGNVSVMR+ALECCHKGWGTSVIVGVAA
Sbjct:  119 RAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNFGVTEFVNPKDHDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAA 301          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 320.087 bits (819), Expect = 4.453e-87
Identity = 153/183 (83.61%), Postives = 162/183 (88.52%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R ATG G+MMNDRKSRFS+NG+PIYHFMGTSTFSQYTVVHDVSVAKIDP APLDKVCLLGCGVPTGLGAVWNTAKVEPGS VA+FGLGTV             SR+IGIDID KK++ AK FGV EFVNPKDHDKPIQ+V+VDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA
Sbjct:  117 RSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 299          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 6.431e-86
Identity = 150/183 (81.97%), Postives = 161/183 (87.98%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R ATG GVMM DRKSRFS+ G+PIYHFMGTSTFSQYTVVHDVSVAKI P APLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVA+FGLGTV             SR+IGIDID  K+D AKNFGVTEF+NPKDH+KPIQQV++DLTDGGVDYSFEC+GNVSVMR+ALECCHKGWGTSVIVGVAA
Sbjct:  116 RAATGVGVMMADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTAKNFGVTEFINPKDHEKPIQQVIIDLTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAA 298          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.097e-85
Identity = 155/183 (84.70%), Postives = 162/183 (88.52%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R ATG GVMMND KSRFS+NG+PIYHFMGTSTFSQYTVVHDVSVAKI+PQAPLDKVCLLGCGVPTGLGAVWNTAKVE GS+VAVFGLGTV             SRVIGIDID KKFD AKNFGVTEFVNPK+HDKPIQQV+VDLTDGGVDYSFECIGNVS+MRAALEC  KGWGTSVIVGVAA
Sbjct:  119 RSATGVGVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVAKNFGVTEFVNPKEHDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECSDKGWGTSVIVGVAA 301          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.791e-65
Identity = 113/174 (64.94%), Postives = 139/174 (79.89%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            ++ D+ SRF+  G+ ++HFMGTSTFS+YTVV D+S+AK++ +AP+DKVCLLGCG+ TG GA  NTAKVEPGS  AVFGLG V             +R+IGID++P KF+ AK FG TEFVNPKDH KPIQ+V+V++TDGGVDYSFECIGNV +MRAALE CHKGWG SVI+GVA
Sbjct:  124 LLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGAVGLAVIMGCKVAGATRIIGIDLNPAKFETAKEFGATEFVNPKDHSKPIQEVLVEMTDGGVDYSFECIGNVQIMRAALEACHKGWGESVIIGVA 297          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 242.276 bits (617), Expect = 1.180e-63
Identity = 116/175 (66.29%), Postives = 136/175 (77.71%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            +M D  SRF+  G+ I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA  NTAK+EPGS+ AVFGLG V             SR+IG+DI+  KF RAK FG TE +NP+D  KPIQ+V++++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAA
Sbjct:  122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAA 296          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.541e-63
Identity = 110/174 (63.22%), Postives = 137/174 (78.74%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            +M D  SRF+  G+ ++HFMGTSTFS+YTVV D+S+A +DP+APLDKVCLLGCG+ TG GA  NTAKVEPGS  AVFGLG V             +R+IG+DI+P+KF +A  FG TE +NPKDH +P+Q+V+V++TDGGVDYSFECIGNV +MR+ALE CHKGWG SVI+GVA
Sbjct:  123 LMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGAVGLAAIMGCKVAGATRIIGVDINPEKFGKAAEFGATECLNPKDHARPVQEVLVEMTDGGVDYSFECIGNVEIMRSALEACHKGWGESVIIGVA 296          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 7.649e-63
Identity = 118/183 (64.48%), Postives = 138/183 (75.41%), Query Frame = 2
Query:    2 RGATGAGVMMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAA 550
            R   G G +M D  SRF+  G+ I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCGV TG GA  NTAKVEPGS  A+FGLG V             SR+IG+DI+  KF +AK FG +E +NP+D  KPIQ+V++++TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVAA
Sbjct:  115 RTTQGKG-LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGVSTGYGAAVNTAKVEPGSTCAIFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFAKAKEFGASECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAA 296          
BLAST of FC873281 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 2.226e-62
Identity = 116/174 (66.67%), Postives = 132/174 (75.86%), Query Frame = 2
Query:   26 MMNDRKSRFSINGQPIYHFMGTSTFSQYTVVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVXXXXXXXXXXXXXSRVIGIDIDPKKFDRAKNFGVTEFVNPKDHDKPIQQVVVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA 547
            +M D  SRF+  G+ I H+MGTSTFS+YTVV D+SVAKIDP APLDKVCLLGCG+ TG GA  NTAKVEPGS  AVFGLG V             SR+I +DI+  KF RAK FG TE +NP+D  KPIQ+V+V+ TDGGVDYSFECIGNV VMRAALE CHKGWG SV+VGVA
Sbjct:  122 LMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPSAPLDKVCLLGCGISTGYGAALNTAKVEPGSTCAVFGLGGVGLAAIMGCKAAGASRIIAVDINKDKFARAKEFGATECINPQDFSKPIQEVLVEKTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVA 295          
The following BLAST results are available for this feature:
BLAST of FC873281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
ADHX_ORYSJ3.084e-8886.34Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI3.084e-8886.34Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ARATH4.453e-8783.61Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_PEA6.431e-8681.97Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
ADHX_MAIZE1.097e-8584.70Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADHX_SPAAU4.791e-6564.94Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]
ADHX_HUMAN1.180e-6366.29Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHH_GADMO1.541e-6363.22Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
ADHX_HORSE7.649e-6364.48Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADHX_RABIT2.226e-6266.67Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BB12FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BB12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873281 ID=FC873281; Name=FC873281; organism=Citrus clementina; type=EST; length=552bp
TAGGGGTGCCACTGGTGCTGGTGTCATGATGAATGACCGCAAGAGCCGTT
TCTCGATAAATGGACAGCCTATCTATCACTTCATGGGAACCTCAACATTT
AGCCAGTACACAGTTGTGCATGATGTTAGTGTTGCAAAGATTGACCCACA
AGCTCCTTTGGACAAAGTATGCCTTCTTGGCTGTGGTGTTCCTACTGGTC
TTGGAGCAGTTTGGAACACTGCAAAAGTAGAGCCGGGTTCTATAGTTGCT
GTTTTTGGCCTTGGGACTGTTGGCCTTGCTGTGGCAGAGGGTGCAAAGGC
AGCTGGAGCTTCACGTGTTATTGGTATAGATATTGACCCGAAAAAGTTTG
ATAGAGCAAAGAATTTTGGAGTTACTGAATTTGTAAATCCCAAGGACCAT
GACAAACCCATTCAGCAGGTCGTTGTCGATCTCACGGATGGTGGTGTTGA
CTATAGTTTTGAATGCATTGGCAATGTCTCTGTGATGAGGGCAGCTTTGG
AATGCTGTCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCTGCA
TC
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