FC873287

Overview
NameFC873287
Unique NameFC873287
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10142 contig Ccv1_Contig10142:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 1.112e-59
Identity = 93/141 (65.96%), Postives = 108/141 (76.60%), Query Frame = 3
Query:    3 KSVKLVLVAIILDCLHYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            + + +    +   CL      D QGDALFALR SLR   NQL DWNQNQVNPCTWS VICD+ N V S+TLS MNFSGTLS R+G+L  L TLTLKGNGITGEIPE+ GNL+SLTSLDLE+N+L G+IP ++GNLKKLQFL
Sbjct:    7 QKMAMAFTLLFFACLCSFVSPDAQGDALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSLTSLDLEDNQLTGRIPSTIGNLKKLQFL 147          

HSP 2 Score: 58.9214 bits (141), Expect = 1.112e-59
Identity = 29/60 (48.33%), Postives = 32/60 (53.33%), Query Frame = 1
Query:  535 TLSQNNFSGTIPXXXXXXXXXXXXXXXXXXXXGQIPVHLFQIPKYNFTGNNLNCGKTLPH 714
            TLS+N  +GTIP                    GQIP  LF+IPKYNFT NNLNCG   PH
Sbjct:  148 TLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSGQIPQSLFEIPKYNFTSNNLNCGGRQPH 207          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.819e-29
Identity = 69/141 (48.94%), Postives = 89/141 (63.12%), Query Frame = 3
Query:    9 VKLVLVAIILDCLH--YLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            V  +L+++IL   H  +LA ++ +GDAL  LR +L  PNN L+ W+   VNPCTW +V C+N N+V  V L +   SG L P +GVL+ L  L L  N ITG IP  LGNL++L SLDL  N   G IP SLG L KL+FL
Sbjct:    6 VVFILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLYLNSFSGPIPESLGKLSKLRFL 146          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 66/139 (47.48%), Postives = 91/139 (65.47%), Query Frame = 3
Query:    9 VKLVLVAIILDCLHYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            V L+ + ++ + L +LA S+ +GDAL +LR +L  PNN L+ W+   VNPCTW +V C+N N+V  V L + + SG L P++G L+ L  L L  N ITG +P +LGNL++L SLDL  N   G IP SLG L KL+FL
Sbjct:   12 VCLISLLLLFNSL-WLASSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLRFL 149          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 3
Query:   72 QGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +GDAL AL+ SL  PN  L+ W+   V PCTW +V C++ N+V  V L + N SG L  ++G L  L  L L  N ITG IPE+LGNL+ L SLDL  N L G IP +LG LKKL+FL
Sbjct:   28 EGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFL 145          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.400e-24
Identity = 62/121 (51.24%), Postives = 74/121 (61.16%), Query Frame = 3
Query:   72 QGDALFALRTSLRV---PNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            Q DAL ALR+SL      NN L+ WN   V PC+W +V C+  N+V  + L S N SG L P++  L  L  L L  N ITGEIPEELG+L  L SLDL  N + G IP SLG L KL+FL
Sbjct:   27 QVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNTENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFL 147          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 6.411e-23
Identity = 60/121 (49.59%), Postives = 71/121 (58.68%), Query Frame = 3
Query:   72 QGDALFALRTSLRV---PNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +GDAL  L+ SL      NN L+ W+   V PCTW +V C+  N V  V L +   SG L P +G L  L  L L  N ITGEIPEELG+L  L SLDL  N + G IP SLG L KL+FL
Sbjct:   32 EGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGKLGKLRFL 152          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: ERL1_ARATH (LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.837e-21
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 3
Query:   72 QGDALFALRTSLRVPNNQLRDWNQ-NQVNPCTWSNVICDN-SNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +G AL A++ S     N L DW+  +  + C+W  V CDN S +V S+ LSS+N  G +SP IG LR L ++ L+GN + G+IP+E+GN +SL  LDL  N L G IP S+  LK+L+ L
Sbjct:   29 EGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISKLKQLETL 148          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 3
Query:   66 DYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            +Y+  AL +++  ++     L  W+ N V+PCTW+ V C +   V S+ ++S   SG LS  IG L  L TL L+ N +TG IP ELG LS L +LDL  NR  G+IP SLG L  L +L
Sbjct:   37 NYEVAALMSVKNKMKDEKEVLSGWDINSVDPCTWNMVGCSSEGFVVSLEMASKGLSGILSTSIGELTHLHTLLLQNNQLTGPIPSELGQLSELETLDLSGNRFSGEIPASLGFLTHLNYL 156          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: ERECT_ARATH (LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.930e-19
Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 3
Query:   36 LDCLHYLA-LSDYQGDALFALRTSLRVPNNQLRDWNQNQVNP-CTWSNVICDNSN-NVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L CL  +A ++  +G  L  ++ S +  NN L DW  +  +  C W  V C+N   NV ++ LS +N  G +SP IG L++L ++ L+GN ++G+IP+E+G+ SSL +LDL  N L G IP S+  LK+L+ L
Sbjct:   13 LFCLSLVATVTSEEGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQL 145          
BLAST of FC873287 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.300e-19
Identity = 48/137 (35.04%), Postives = 79/137 (57.66%), Query Frame = 3
Query:   15 LVLVAIILDCLHYLALSDYQGDALFALRTSLRVPNNQLRDWNQNQVNPCTWSNVICDNSNNVASVTLSSMNFSGTLSPRIGVLRTLSTLTLKGNGITGEIPEELGNLSSLTSLDLENNRLVGKIPPSLGNLKKLQFL 425
            L+L+   + C       + + +AL  ++  L  P+   ++W++  V+PC+W+ + C + N V  +   S + SGTLS  IG L  L  ++L+ N I+G+IP E+ +L  L +LDL NNR  G+IP S+  L  LQ+L
Sbjct:   15 LLLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISCSSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLSNNRFSGEIPGSVNQLSNLQYL 151          
The following BLAST results are available for this feature:
BLAST of FC873287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
Y5129_ARATH1.112e-5965.96Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH7.819e-2948.94Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK2_ARATH1.742e-2847.48Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
BAK1_ARATH4.744e-2651.69BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK5_ARATH3.400e-2451.24Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH6.411e-2349.59Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
ERL1_ARATH7.837e-2145.00LRR receptor-like serine/threonine-protein kinase ... [more]
Y5457_ARATH1.746e-2043.33Probable LRR receptor-like serine/threonine-protei... [more]
ERECT_ARATH1.930e-1939.85LRR receptor-like serine/threonine-protein kinase ... [more]
Y2239_ARATH4.300e-1935.04Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BC07FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873287 ID=FC873287; Name=FC873287; organism=Citrus clementina; type=EST; length=756bp
TGAAGAGCGTGAAATTGGTCCTTGTTGCTATAATATTGGATTGCTTGCAT
TATTTGGCGCTGTCTGATTATCAAGGAGATGCACTATTTGCATTGAGGAC
TTCATTGCGTGTTCCAAACAATCAGCTAAGAGATTGGAATCAGAACCAAG
TTAATCCTTGCACTTGGTCAAATGTCATTTGTGATAATAGCAACAATGTT
GCCTCTGTAACATTGTCTTCCATGAACTTTTCTGGAACCTTGTCCCCAAG
AATAGGAGTTCTGAGGACTCTTTCAACACTCACATTAAAAGGAAATGGCA
TAACTGGTGAAATACCTGAAGAGCTTGGTAATCTTTCAAGCTTGACAAGC
TTGGACTTGGAAAATAATCGCTTAGTTGGAAAAATACCACCTTCCCTTGG
CAATCTTAAAAAGCTTCAGTTCTTGTAAGTGATTCCATCAATAAAAATTT
TAGTTTTAATCTATATGGTTTTTCTTCACTTTTTTCATGATCTGGCACAA
AAAGTCTCGATTTGTTTTTGATCGTTGAACCAGGACTTTGAGTCAAAACA
ATTTTAGTGGGACCATCCCTGATTCACTCACAACTCTTTCAAGCTTGATC
AGTATTCAGCTGGATTCGAATAATCTCAGTGGTCAAATTCCAGTGCATTT
GTTCCAAATTCCAAAATACAATTTCACGGGAAACAACTTGAACTGTGGTA
AAACTCTTCCACATTCTTGTGAATCTAGTAGCAATGATTCANGGAGTTCA
AAGAAG
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