FC873296

Overview
NameFC873296
Unique NameFC873296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length779
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1098 contig Ccv1_Contig1098:3..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC873296 vs. ExPASy Swiss-Prot
Match: TRA1_MAIZE (Putative AC transposase OS=Zea mays PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 1.104e-33
Identity = 91/262 (34.73%), Postives = 136/262 (51.91%), Query Frame = 2 
Query:    2 LSSLQPLWKPVSRNEIKKEIMDIYEYERAKKVSALDCNQSRIAITAKMWTVENQSVGYMAVTAHFIDDSWTLQSHLLRFIPVSTPHTAEVVCDTLLHCLMDHNIDRKLSALIVDNCSYNEQMIQYLLLKLGKDD--LIMHGQLFHIHCFVDTLNLIVKDGLSVISDAIAKIRDSVSFWSESSKRMEKFEEIAHLLGITSDRKLVLDCAESWNSTYLMISTALQYK-SVFSLLEQHEGQYGCL-PSEKDWELAHILEEKLKVY 775
            + SL+P +   SR   +K IMD+Y  E+ K    L   QSR + T  MWT   Q+  YM VT H+IDD W LQ  ++ F  V   HT + +  T    ++  NI++KL AL +DN S NE  +  ++  L   D  L+  G  FH+ C    LNL+ KDGL+VI+  I KI+  V     S  + E+  + A    +   + +  D +  WNSTYLM+  AL YK ++  L      +Y  + P  ++W++A  L + LK +
Sbjct:  255 VKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWT-SCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTRWNSTYLMLRDALYYKPALIRLKTSDPRRYDAICPKAEEWKMALTLFKCLKKF 515
[Close]
BLAST of FC873296 vs. ExPASy Swiss-Prot
Match: TRAC9_MAIZE (Putative AC9 transposase OS=Zea mays PE=4 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.081e-32
Identity = 87/242 (35.95%), Postives = 125/242 (51.65%), Query Frame = 2 
Query:    2 LSSLQPLWKPVSRNEIKKEIMDIYEYERAKKVSALDCNQSRIAITAKMWTVENQSVGYMAVTAHFIDDSWTLQSHLLRFIPVSTPHTAEVVCDTLLHCLMDHNIDRKLSALIVDNCSYNEQMIQYLLLKLGKDD--LIMHGQLFHIHCFVDTLNLIVKDGLSVISDAIAKIRDSVSFWSESSKRMEKFEEIAHLLGITSDRKLVLDCAESWNSTYLMISTALQYK-SVFSLLEQHEGQYGCL 718
            + SL+P +   SR   +K IMD+Y  E+ K    L   QSR + T  MWT   Q+  YM VT H+IDD W LQ  ++ F  V   HT + +  T    ++  NI++KL AL +DN S NE  +  ++  L   D  L+  G  FH+ C    LNL+ KDGL+VI+  I KI+  V     S  + E+  + A    +   + +  D +  WNSTYLM+  AL YK ++  L      +Y CL
Sbjct:  200 VKSLRPHFPIKSRVTARKYIMDLYLEEKEKLYGKLKDVQSRFSTTMDMWT-SCQNKSYMCVTIHWIDDDWCLQKRIVGFFHVEGRHTGQRLSQTFTAIMVKWNIEKKLFALSLDNASANEVAVHDIIEDLQDTDSNLVCDGAFFHVRCACHILNLVAKDGLAVIAGTIEKIKAIVLAVKSSPLQWEELMKCASECDLDKSKGISYDVSTRWNSTYLMLRDALYYKPALIRLKTSDPRRYVCL 440
The following BLAST results are available for this feature:
BLAST of FC873296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRA1_MAIZE1.104e-3334.73Putative AC transposase OS=Zea mays PE=2 SV=2[more]
TRAC9_MAIZE2.081e-3235.95Putative AC9 transposase OS=Zea mays PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BD04FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BD04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873296 ID=FC873296; Name=FC873296; organism=Citrus clementina; type=EST; length=779bp
GTTATCCTCTCTTCAACCTTTGTGGAAACCAGTGTCCCGAAATGAAATTA
AAAAGGAAATTATGGATATATATGAGTATGAAAGGGCTAAGAAAGTGAGT
GCATTGGACTGCAATCAGAGTAGGATTGCCATTACGGCAAAAATGTGGAC
TGTAGAAAACCAATCCGTAGGATATATGGCAGTTACAGCACACTTCATTG
ATGACTCTTGGACATTACAGAGTCATCTTTTGAGGTTTATTCCTGTGTCT
ACTCCACATACAGCTGAAGTAGTTTGTGACACATTACTGCACTGTTTGAT
GGATCATAACATTGATCGGAAGTTATCTGCCCTGATTGTTGATAATTGTA
GTTATAATGAGCAAATGATTCAATATCTTTTATTGAAGCTCGGGAAAGAT
GATTTAATCATGCATGGGCAGTTATTTCATATTCATTGTTTTGTCGATAC
TTTAAATTTGATTGTGAAGGATGGGTTGAGTGTGATTAGTGATGCAATTG
CTAAGATTCGTGATAGTGTTAGTTTTTGGTCAGAATCATCTAAAAGAATG
GAAAAGTTTGAAGAAATCGCTCATTTGTTAGGCATTACAAGTGATAGGAA
ATTAGTGCTTGATTGTGCTGAGAGTTGGAATTCAACATATCTCATGATTT
CCACTGCATTGCAGTATAAAAGTGTGTTCTCTCTATTAGAGCAACACGAG
GGACAGTATGGTTGTTTGCCTAGTGAGAAGGATTGGGAATTGGCACACAT
CTTGGAAGAAAAATTGAAAGTTTATACGA
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