FC873311

Overview
NameFC873311
Unique NameFC873311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14320 contig Ccv1_Contig14320:63..609. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 3.070e-56
Identity = 109/149 (73.15%), Postives = 124/149 (83.22%), Query Frame = 2
Query:  113 MAETGSAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            M+ T  A+ TDLP+KRPR     EA  +NNG   ME ++     K+P C+SS+IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+V+VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSI NPK VLVIGGGDG VL E++
Sbjct:    1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVA 143          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.685e-54
Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 2
Query:  140 TDLPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            T+LP+KRPR++  E E   ANN+NNG      +  +    ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV+VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S
Sbjct:   12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 146          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.177e-53
Identity = 103/141 (73.05%), Postives = 119/141 (84.40%), Query Frame = 2
Query:  134 AATDLPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            +ATDL  KRPR++      ++N G+  ME    D  K+P C S+VIPGWFSE+SPMWPGEAHSLKVEK+LFQGKSDYQ+V+VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E++
Sbjct:    7 SATDL--KRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVA 139          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 9.244e-53
Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = 2
Query:  188 NNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            NNNNNG       ++K+  CISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQ+VMVFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S
Sbjct:    7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 121          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.207e-52
Identity = 104/137 (75.91%), Postives = 115/137 (83.94%), Query Frame = 2
Query:  137 ATDLPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            +TD PLKR R+D   E N  ++      +    QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+VMVFQS+TYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E++
Sbjct:   10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVA 138          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.743e-51
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 2
Query:  215 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            ME  +NK+   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S
Sbjct:    1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 111          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 3.884e-51
Identity = 100/121 (82.64%), Postives = 107/121 (88.43%), Query Frame = 2
Query:  185 ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            AN+NNNG       +N+ P  ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVL+LDGVIQLTERDECAYQEMI HLPLCSIPNPK VLVIGGGDG VL E+S
Sbjct:    4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVS 117          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 5.072e-51
Identity = 98/122 (80.33%), Postives = 106/122 (86.89%), Query Frame = 2
Query:  182 EANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            E  N +NG      ++ K+   ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S
Sbjct:    2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 119          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.625e-51
Identity = 102/143 (71.33%), Postives = 118/143 (82.52%), Query Frame = 2
Query:  128 SAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            S    +  +K  RDD EK +N  +  +V M+++  +K P  + +SSVIPGWFSEISPMWPGEAHSLK+EKILFQGKS+YQ VMVFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E++
Sbjct:    5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVA 146          
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.517e-50
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 2
Query:  215 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547
            ME   N +   ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV+VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S
Sbjct:    1 MEEQGNNESAYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 111          
The following BLAST results are available for this feature:
BLAST of FC873311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
SPD2_ARATH3.070e-5673.15Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC1.685e-5476.43Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD1_ARATH3.177e-5373.05Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPD2_DATST9.244e-5382.50Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPD1_PEA1.207e-5275.91Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD1_DATST1.743e-5187.39Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPDE_NICSY3.884e-5182.64Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD1_HYONI5.072e-5180.33Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]
SPD2_PEA6.625e-5171.33Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ... [more]
SPD2_HYONI2.517e-5084.68Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA08FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AA08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873311 ID=FC873311; Name=FC873311; organism=Citrus clementina; type=EST; length=547bp
GTGTCAAGTCACTTAATAGTTGCCGGGGCATCCATGTAACGAAATACGAG
ATCTGAATGATGGGTTTTCGGGGGTTTGAAAGCAGAAAGAATAATCAATA
ATAATATCTGTTATGGCGGAAACTGGGTCTGCTGCTGCCACTGATTTGCC
GTTGAAGAGGCCGAGAGATGACGGAGAGAAGGAGGCTAATAACAACAATA
ACGGGAGTGTGTTGATGGAGATGGACTCTAACAAACAGCCTGATTGTATC
TCCTCTGTTATTCCTGGCTGGTTCTCTGAAATCAGCCCAATGTGGCCCGG
TGAGGCACATTCATTGAAGGTTGAGAAAATCTTGTTTCAAGGGAAGTCTG
ATTACCAGAATGTCATGGTCTTTCAGTCTTCAACATATGGGAAGGTTCTT
ATTTTGGATGGGGTGATTCAGCTTACTGAGAGGGATGAATGTGCATATCA
AGAAATGATCACTCACCTTCCACTTTGTTCAATTCCAAACCCGAAAAACG
TTCTGGTAATTGGAGGAGGAGATGGTGAGGTCTTGCCGGAAATATCT
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