FC873311
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2) HSP 1 Score: 217.624 bits (553), Expect = 3.070e-56 Identity = 109/149 (73.15%), Postives = 124/149 (83.22%), Query Frame = 2 Query: 113 MAETGSAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDSN----KQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 M+ T A+ TDLP+KRPR EA +NNG ME ++ K+P C+SS+IPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+V+VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSI NPK VLVIGGGDG VL E++ Sbjct: 1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSISNPKKVLVIGGGDGGVLREVA 143
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1) HSP 1 Score: 211.846 bits (538), Expect = 1.685e-54 Identity = 107/140 (76.43%), Postives = 119/140 (85.00%), Query Frame = 2 Query: 140 TDLPLKRPRDD-GEKE---ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 T+LP+KRPR++ E E ANN+NNG + + ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV+VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S Sbjct: 12 TELPVKRPREEEAETEMEAANNSNNGC-----EKEESSPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 146
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1) HSP 1 Score: 207.608 bits (527), Expect = 3.177e-53 Identity = 103/141 (73.05%), Postives = 119/141 (84.40%), Query Frame = 2 Query: 134 AATDLPLKRPRDDGEKEANNNNNGSVLMEM---DSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 +ATDL KRPR++ ++N G+ ME D K+P C S+VIPGWFSE+SPMWPGEAHSLKVEK+LFQGKSDYQ+V+VFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E++ Sbjct: 7 SATDL--KRPREE------DDNGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVA 139
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 9.244e-53 Identity = 99/120 (82.50%), Postives = 108/120 (90.00%), Query Frame = 2 Query: 188 NNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 NNNNNG ++K+ CISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQ+VMVFQS+TYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S Sbjct: 7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 121
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.207e-52 Identity = 104/137 (75.91%), Postives = 115/137 (83.94%), Query Frame = 2 Query: 137 ATDLPLKRPRDDGEKEANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 +TD PLKR R+D E N ++ + QP+ +SSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQ+VMVFQS+TYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E++ Sbjct: 10 STDSPLKRQRED---EVNGVSD-----TLSKEPQPNGLSSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVA 138
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 1.743e-51 Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 2 Query: 215 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 ME +NK+ ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S Sbjct: 1 MEEANNKESPYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 111
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 3.884e-51 Identity = 100/121 (82.64%), Postives = 107/121 (88.43%), Query Frame = 2 Query: 185 ANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 AN+NNNG +N+ P ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVL+LDGVIQLTERDECAYQEMI HLPLCSIPNPK VLVIGGGDG VL E+S Sbjct: 4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVS 117
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 5.072e-51 Identity = 98/122 (80.33%), Postives = 106/122 (86.89%), Query Frame = 2 Query: 182 EANNNNNGSVLMEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 E N +NG ++ K+ ISSV+PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S Sbjct: 2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 119
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 6.625e-51 Identity = 102/143 (71.33%), Postives = 118/143 (82.52%), Query Frame = 2 Query: 128 SAAATDLPLKRPRDDGEKEANNNNNGSVLMEMDS-NKQP--DCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 S + +K RDD EK +N + +V M+++ +K P + +SSVIPGWFSEISPMWPGEAHSLK+EKILFQGKS+YQ VMVFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E++ Sbjct: 5 STVELESSMKEHRDDDEK-SNGFSVSAVSMDVEGGDKDPSGNGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGKSEYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVA 146
BLAST of FC873311 vs. ExPASy Swiss-Prot
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 2.517e-50 Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 2 Query: 215 MEMDSNKQPDCISSVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDGVIQLTERDECAYQEMITHLPLCSIPNPKNVLVIGGGDGEVLPEIS 547 ME N + ISS++PGWFSEISP+WPGEAHSLKVEKILFQGKSDYQNV+VFQSSTYGKVL+LDGVIQLTERDECAYQEMITHLPLCSIPNPK VLVIGGGDG VL E+S Sbjct: 1 MEEQGNNESAYISSILPGWFSEISPLWPGEAHSLKVEKILFQGKSDYQNVVVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVS 111 The following BLAST results are available for this feature:
BLAST of FC873311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 173
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873311 ID=FC873311; Name=FC873311; organism=Citrus clementina; type=EST; length=547bpback to top |