FC873313

Overview
NameFC873313
Unique NameFC873313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length866
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1200 contig Ccv1_Contig1200:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873313 vs. ExPASy Swiss-Prot
Match: DNAJ_METAC (Chaperone protein dnaJ OS=Methanosarcina acetivorans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.853e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  260 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFN 445
            D+Y +LG+ ++A++E I+K Y KLALQ HPD+NK   AE  FK ISEAY  LSDT KR  ++
Sbjct:    6 DYYEILGLPKDASVEDIKKTYRKLALQYHPDRNKDPGAEDKFKEISEAYAVLSDTEKRAQYD 67          
BLAST of FC873313 vs. ExPASy Swiss-Prot
Match: DNJ49_ARATH (Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.279e-12
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  260 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFN 445
            D+Y +LG+++  +++ IRK Y KL+L++HPDKNK   +E AFK +S+A+TCLSD   RR F+
Sbjct:   99 DYYAILGLEKNCSVDEIRKAYRKLSLKVHPDKNKAPGSEEAFKKVSKAFTCLSDGNSRRQFD 160          
BLAST of FC873313 vs. ExPASy Swiss-Prot
Match: DNAJ_METMA (Chaperone protein dnaJ OS=Methanosarcina mazei GN=dnaJ PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.409e-11
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  260 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFN 445
            D+Y +LG+ +++++E I+K Y KLALQ HPD+NK   AE  FK ISEAY  LSD  KR  ++
Sbjct:    6 DYYEILGLSKDSSVEDIKKTYRKLALQYHPDRNKEPGAEEKFKEISEAYAVLSDAEKRAQYD 67          
BLAST of FC873313 vs. ExPASy Swiss-Prot
Match: DNJB4_MOUSE (DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  260 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFN 445
            D+Y +LG+D+ AT E ++K Y K AL+ HPDKNK  +AE  FK ++EAY  LSD  KR  ++
Sbjct:    4 DYYHILGIDKGATDEDVKKAYRKQALKFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYD 65          
BLAST of FC873313 vs. ExPASy Swiss-Prot
Match: DNAJ_METTE (Chaperone protein dnaJ OS=Methanosarcina thermophila GN=dnaJ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.153e-11
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 2
Query:  260 DWYRLLGVDEEATIETIRKRYHKLALQLHPDKNKHRKAEIAFKLISEAYTCLSDTAKRRAFN 445
            D+Y +LG+  +AT E I+K Y KLAL+ HPD+NK   AE  FK ISEAY  LSD  KR  ++
Sbjct:    6 DYYEILGLSRDATPEDIKKSYRKLALKYHPDRNKEPGAEEKFKEISEAYAVLSDPEKRAQYD 67          
The following BLAST results are available for this feature:
BLAST of FC873313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DNAJ_METAC4.853e-1254.84Chaperone protein dnaJ OS=Methanosarcina acetivora... [more]
DNJ49_ARATH8.279e-1250.00Chaperone protein dnaJ 49 OS=Arabidopsis thaliana ... [more]
DNAJ_METMA2.409e-1151.61Chaperone protein dnaJ OS=Methanosarcina mazei GN=... [more]
DNJB4_MOUSE9.153e-1150.00DnaJ homolog subfamily B member 4 OS=Mus musculus ... [more]
DNAJ_METTE9.153e-1153.23Chaperone protein dnaJ OS=Methanosarcina thermophi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AA10FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873313 ID=FC873313; Name=FC873313; organism=Citrus clementina; type=EST; length=866bp
AAAAAAACTCTCCCGAAAACTTTGCTCTTTTTTCTTAACCGCTCCACTCT
CATTTCCCAAAAAAAAAAGAAAAAAAAAATCACATTCTTTGATTCTTGTT
CAAGTTTTCTTTAAGTTTTGTCAAATGGGGATATTTGATAAAGAAGATTC
AGATATGAAATCCAAGTTAGTTCTAGATATTTGCTCCATTTCAACAACCG
CCATTGGCTGTGCTCACAGGCGCATTAGTCCTCCAAGCCCCGCTGAGTCA
CATTTCATCGACTGGTACCGCCTTCTCGGCGTTGACGAAGAAGCAACAAT
AGAAACTATCCGAAAGCGGTACCATAAACTTGCTCTGCAACTTCATCCGG
ACAAGAACAAGCACCGCAAAGCTGAGATTGCATTCAAGCTTATTTCAGAG
GCATATACATGTCTCTCAGACACTGCCAAGAGAAGAGCGTTCAATTTGGA
GAGATGGAAAAAGTTTTGCATTGAATGCAACAGAATCCCCTACACAAGCT
GCAAGTCACCTGTGAATTCACGTGCATCAAAATACAAGGCTTGGAATCCA
GCTGCCTGGTCAAGATCTTATAAAATTCTGAGAAACCTGAGGGACATAAA
GGAAAGATTCAAAGAAGAGGCAAAAGTGATAGAGAACTGTTTGAGTGCTG
CTGCATCACGGAAGGAATCTCTACTTGTTAATCCATCAAGCAATTTGTTC
CAAAGTCGCCACAGGACCCAGAAAGAGACTCCTGTCTTTGACCCATCTGA
CTATCTCTTTCAAGGATACCCGCATCTCCGAAATAGAATGTTTATCAAAC
CACAGAGTTTCTGGTACTTTCCAAGGGAAAATATGGAAAAATGTGATGAG
GGCAGTGGGATGTGTT
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