FC873315

Overview
NameFC873315
Unique NameFC873315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length821
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4877 contig Ccv1_Contig4877:60..880. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.629e-46
Identity = 86/160 (53.75%), Postives = 113/160 (70.62%), Query Frame = 2
Query:  338 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAY 817
            +PC+ ++D  G + K       SKE  +KMY+ M+TL VMDS+LY+ QRQGR SFY+T+ GEEAI+IGSAAAL   D I  QYRE GV +WRG+T+    NQ   N+ D GKGRQMP+H+GS+K+N  TISSP+ TQLPQAVG +Y+ K+  +  C + Y
Sbjct:   64 IPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVY 223          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.167e-44
Identity = 83/182 (45.60%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  272 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAY 817
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y
Sbjct:   50 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVICY 231          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.525e-44
Identity = 84/182 (46.15%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  272 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAY 817
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICY 235          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.525e-44
Identity = 84/182 (46.15%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  272 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAY 817
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICY 235          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.525e-44
Identity = 84/182 (46.15%), Postives = 118/182 (64.84%), Query Frame = 2
Query:  272 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAY 817
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICY 235          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.436e-44
Identity = 82/182 (45.05%), Postives = 117/182 (64.29%), Query Frame = 2
Query:  272 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAY 817
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K Y  M  L  MD +LYE+QR+GR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F +Q + N  D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K    +   + Y
Sbjct:   51 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQREGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVNDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRIVICY 232          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.291e-43
Identity = 82/182 (45.05%), Postives = 117/182 (64.29%), Query Frame = 2
Query:  272 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAVAY 817
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG ++ +++TISSP+ATQ+PQAVG AY+ K    +   + Y
Sbjct:   64 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICY 245          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_PSEAE (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.063e-21
Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 2
Query:  320 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAV--GVAYSLKMEKKDACA 808
            E+S+      RVLDD+G  + G    Q+S E  ++    M+  ++ D+ +  AQRQ + SFY+  +GEEAI      AL   D   P YR+ G+L+ R Y L     Q+ +N+AD  KGRQ+PI Y SK+  + +IS  +ATQ  QAV  G+A ++K + + A A
Sbjct:   46 ETSDLAYSLVRVLDDDGHAV-GPWNPQLSNEQLLRGMRAMLKTRLFDARMLTAQRQKKLSFYMQCLGEEAIATAHTLALRDGDMCFPTYRQQGILITREYPLVDMICQLLSNEADPLKGRQLPIMYSSKEAGFFSISGNLATQFIQAVGWGMASAIKGDTRIASA 209          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_BACSU (2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis GN=bfmBAA PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.040e-21
Identity = 56/138 (40.58%), Postives = 83/138 (60.14%), Query Frame = 2
Query:  401 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKG-RQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 808
            ++ + AV MY  M+  + +D  ++   R G+  F ++  G+EA  +G+A AL  + D++LP YR+ GV+L  G T +      FA  AD   G RQMP H+G KK   +T SSP+ TQ+P AVG+A + +MEKKD  A
Sbjct:   11 LTDQEAVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVLPYYRDMGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVPHAVGIALAGRMEKKDIAA 148          
BLAST of FC873315 vs. ExPASy Swiss-Prot
Match: ODBA_PSEPU (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida GN=bkdA1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.619e-20
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  350 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVG--VAYSLKMEKKDACA 808
            RVLD+ G+  +G   + +  ++  +    M+  ++ DS +  AQRQ + SFY+ ++GEEAI  G A AL+  D   P YR+  +L+ R  +L +   Q+ +N+ D  KGRQ+PI Y  ++  + TIS  +ATQ  QAVG  +A ++K + K A A
Sbjct:   56 RVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 209          
The following BLAST results are available for this feature:
BLAST of FC873315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ODBA_DICDI3.629e-4653.752-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT1.167e-4445.602-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR1.525e-4446.152-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA1.525e-4446.152-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN1.525e-4446.152-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE4.436e-4445.052-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN1.291e-4345.052-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PSEAE1.063e-2138.182-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODBA_BACSU4.040e-2140.582-oxoisovalerate dehydrogenase subunit alpha OS=Ba... [more]
ODBA_PSEPU2.619e-2036.772-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3AA12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873315 ID=FC873315; Name=FC873315; organism=Citrus clementina; type=EST; length=821bp
TGTTCAATATCGAAAAAATTAAATGGCGATTTGGTTAACAAAATCAAGAG
CCATGGCCCAATGCTTACGGCAAAGAGTCGGTTTGCTGAGGATATTAAGT
GGCCAGAGTTGTTCATCCCCATCAACCATATTCCCACTTCAGCAATATAA
TTCACCATCACTTCCAAGCAAAACCCTTTTCTCGCCGGGGCGTTCCGAGT
CCACCGTTGCTGCCAATCAGCTGGATTCTTTGTCTTCCAGTGACAGCGAT
GATGATCATCAGGTCTTGGATTTTCCCGGAGGCAAAGTTGGATATACTTC
TGAAATGAGGTTCATTCCTGAGTCTTCAGAGAAAAGAGTGCCTTGTTTTC
GAGTTCTTGATGACAATGGAGAGCTAATCAAGGGCAGTGATTTTCAACAG
GTGAGCAAGGAAGTTGCTGTAAAGATGTATAGCCATATGGTCACACTGCA
GGTAATGGACTCTGTATTGTACGAAGCACAAAGGCAAGGGAGATTTTCTT
TCTACCTTACAACAATTGGTGAAGAAGCAATCAACATAGGATCAGCAGCT
GCACTCAGCGCCGATGATTTTATCTTGCCTCAGTACCGAGAGCCTGGAGT
ACTCTTATGGCGTGGCTACACATTGCAACAATTTGCAAACCAGGTGTTTG
CAAACAAGGCTGATGATGGGAAAGGCAGACAGATGCCAATTCATTATGGG
TCTAAAAAGCTTAACTACATCACCATATCGTCACCTATCGCTACACAACT
TCCTCAAGCTGTTGGTGTGGCTTATTCTCTTAAAATGGAGAAAAAGGATG
CCTGTGCAGTTGCTTATACTG
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