FC873317
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_ARATH (DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2) HSP 1 Score: 296.204 bits (757), Expect = 1.469e-79 Identity = 146/175 (83.43%), Postives = 162/175 (92.57%), Query Frame = 3 Query: 3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKYPTLL 527 RL+HQVE M RYYRIPVLLIEFSQDKSFSFQS+SDI DDVTP NIISKLSLLVLHFPRLR++WS SLHATAEIF LK+NQDEPDE +AIRVGVPSE+GI+END+RAENYNTSAVEFLRRLPGV+D+NYRSIM+ CKSLA+LA LPVE LAELMGG K A++LR+FLDAKYPTLL Sbjct: 782 RLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAVEFLRRLPGVSDANYRSIMEKCKSLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_MOUSE (DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=3) HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33 Identity = 77/175 (44.00%), Postives = 107/175 (61.14%), Query Frame = 3 Query: 3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKYPTLL 527 RLY Q M RYYR PVLLIEF K FS +++ +++ SKL+LL LHFPRLR++W PS HATAE+F LK N+ +PD A A+ + SE + E+D YN +F+ ++PGV N RS+M+ K++A+LA L +ERL ++G A+ L DFL Y L+ Sbjct: 741 RLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET-LPESD----RYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGNAKQLHDFLHTAYADLV 910
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_HUMAN (DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3) HSP 1 Score: 139.043 bits (349), Expect = 3.001e-32 Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = 3 Query: 3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKY 515 RLY Q +M RYY+ PVLLIEF K FS S + +++ N+I SKL+LL LHFPRLRI+W PS HATAE+F LK ++ +PD A A+ + S E +E YN +FL ++PGV N RS+M K++A+LA L + L ++G A+ L DF+ + Sbjct: 740 RLYSQCISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADS-----ETLPESEKYNPGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSF 905
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_CRIGR (DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2 SV=3) HSP 1 Score: 135.961 bits (341), Expect = 2.541e-31 Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = 3 Query: 3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKY 515 RLY Q M RYYR PVLLIEF K FS +++ +++ SKL+LL LHFPRLR++W PS HATAE+F LK N+ +PD A A+ + SE + E+D YN +F+ ++PG+ N S+M+ K++A+LA L ERL ++G A+ L DFL Y Sbjct: 737 RLYSQCLAMSRYYRRPVLLIEFDAGKPFSLAPRGSFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET-LPESD----KYNPGPQDFVLKMPGINAKNCHSLMNHVKNIAELASLSQERLTSILGHAGNAKQLYDFLHTAY 902
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: RAD16_SCHPO (DNA repair protein rad16 OS=Schizosaccharomyces pombe GN=rad16 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.131e-24 Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = 3 Query: 3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIM-DGCKSLADLALLPVERLAELMG 467 RLY Q E M YY IPVLLIEF Q +SF+ SD+ ++ N++ SKL LL L FP LRI+WS S + T+ IF LKA + EPD A A +G+ + YN + ++ L LP +T NYR++ G K + + + + +EL+G Sbjct: 724 RLYSQCEAMTEYYEIPVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAASIGLEA------GQDSTNTYNQAPLDLLMGLPYITMKNYRNVFYGGVKDIQEASETSERKWSELIG 873
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_DROME (DNA repair endonuclease XPF OS=Drosophila melanogaster GN=mei-9 PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 6.702e-24 Identity = 67/169 (39.64%), Postives = 95/169 (56.21%), Query Frame = 3 Query: 3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNN--IISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFL 503 RLY+Q M R+Y P+LLIEF Q+K F Q + + N I+ KL LL LHFP+LR+IWSPS +ATA++F LK + EPD A +G S++ + ++N+ +FL RLPGV N ++ SL L L + L EL+ Q++A+ L D L Sbjct: 754 RLYNQCVQMQRHYAKPILLIEFDQNKPFHLQGKFMLSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAALG--SDEPTAGEQL---HFNSGIYDFLLRLPGVHTRNIHGLLRKGGSLRQLLLRSQKELEELLQSQESAKLLYDIL 917
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_DICDI (DNA repair endonuclease XPF OS=Dictyostelium discoideum GN=ercc4 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.478e-19 Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 3 Query: 3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDD-VTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELM 464 RL+ Q+E M R Y+ P+LLIEF ++ F + ++ D ++P ++ SKL L FPRLR+IWS S + T +I+ +K EPD PS ++ +NYN +A + LR +PGV D N IMD L L+ L + + +M Sbjct: 796 RLFTQIEAMNRIYKNPILLIEFDPNQPFYLVAPDELQKDYLSPFSLPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQIKDGYPEPD---------PSMVNVIPEVNDDQNYNFNAQDVLRTMPGVNDKNINLIMDNVDDLYHLSKLSLSEFSTIM 941
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: RAD1_YEAST (DNA repair protein RAD1 OS=Saccharomyces cerevisiae GN=RAD1 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13 Identity = 54/183 (29.51%), Postives = 86/183 (46.99%), Query Frame = 3 Query: 3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASD--------------IGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRA--ENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFL 503 RL +Q + M++YY P LLIEF + +SFS + S+ I ++ + I KL+ LVL FP L+IIWS S T I LK +++PD + A+ +G + + + N S + L +PGV+ +Y ++ KS L L + EL+ + + FL Sbjct: 878 RLANQCKKMLKYYAYPTLLIEFDEGQSFSLEPFSERRNYKNKDISTVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAVILGTNKVRSDFNSTAKGLKDGDNESKFKRLLNVPGVSKIDYFNLRKKIKSFNKLQKLSWNEINELINDEDLTDRIYYFL 1060 The following BLAST results are available for this feature:
BLAST of FC873317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC873317 ID=FC873317; Name=FC873317; organism=Citrus clementina; type=EST; length=824bpback to top |