FC873317

Overview
NameFC873317
Unique NameFC873317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length824
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig96 contig Ccv1_Contig96:315..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_ARATH (DNA repair endonuclease UVH1 OS=Arabidopsis thaliana GN=UVH1 PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.469e-79
Identity = 146/175 (83.43%), Postives = 162/175 (92.57%), Query Frame = 3
Query:    3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKYPTLL 527
            RL+HQVE M RYYRIPVLLIEFSQDKSFSFQS+SDI DDVTP NIISKLSLLVLHFPRLR++WS SLHATAEIF  LK+NQDEPDE +AIRVGVPSE+GI+END+RAENYNTSAVEFLRRLPGV+D+NYRSIM+ CKSLA+LA LPVE LAELMGG K A++LR+FLDAKYPTLL
Sbjct:  782 RLFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRLLWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAVEFLRRLPGVSDANYRSIMEKCKSLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956          
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_MOUSE (DNA repair endonuclease XPF OS=Mus musculus GN=Ercc4 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 6.047e-33
Identity = 77/175 (44.00%), Postives = 107/175 (61.14%), Query Frame = 3
Query:    3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKYPTLL 527
            RLY Q   M RYYR PVLLIEF   K FS         +++ +++ SKL+LL LHFPRLR++W PS HATAE+F  LK N+ +PD A A+ +   SE  + E+D     YN    +F+ ++PGV   N RS+M+  K++A+LA L +ERL  ++G    A+ L DFL   Y  L+
Sbjct:  741 RLYSQCLAMSRYYRRPVLLIEFDPSKPFSLAPRGAFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET-LPESD----RYNPGPQDFVLKMPGVNAKNCRSLMNQVKNIAELATLSLERLTTILGHSGNAKQLHDFLHTAYADLV 910          
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_HUMAN (DNA repair endonuclease XPF OS=Homo sapiens GN=ERCC4 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 3.001e-32
Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKY 515
            RLY Q  +M RYY+ PVLLIEF   K FS  S   +  +++ N+I SKL+LL LHFPRLRI+W PS HATAE+F  LK ++ +PD A A+ +   S     E    +E YN    +FL ++PGV   N RS+M   K++A+LA L  + L  ++G    A+ L DF+   +
Sbjct:  740 RLYSQCISMSRYYKRPVLLIEFDPSKPFSLTSRGALFQEISSNDISSKLTLLTLHFPRLRILWCPSPHATAELFEELKQSKPQPDAATALAITADS-----ETLPESEKYNPGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSF 905          
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_CRIGR (DNA repair endonuclease XPF OS=Cricetulus griseus GN=ERCC4 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.541e-31
Identity = 74/171 (43.27%), Postives = 103/171 (60.23%), Query Frame = 3
Query:    3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFLDAKY 515
            RLY Q   M RYYR PVLLIEF   K FS         +++ +++ SKL+LL LHFPRLR++W PS HATAE+F  LK N+ +PD A A+ +   SE  + E+D     YN    +F+ ++PG+   N  S+M+  K++A+LA L  ERL  ++G    A+ L DFL   Y
Sbjct:  737 RLYSQCLAMSRYYRRPVLLIEFDAGKPFSLAPRGSFFQEMSSSDVSSKLTLLTLHFPRLRLLWCPSPHATAELFEELKQNKPQPDAATAMAITADSET-LPESD----KYNPGPQDFVLKMPGINAKNCHSLMNHVKNIAELASLSQERLTSILGHAGNAKQLYDFLHTAY 902          
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: RAD16_SCHPO (DNA repair protein rad16 OS=Schizosaccharomyces pombe GN=rad16 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.131e-24
Identity = 62/156 (39.74%), Postives = 88/156 (56.41%), Query Frame = 3
Query:    3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIM-DGCKSLADLALLPVERLAELMG 467
            RLY Q E M  YY IPVLLIEF Q +SF+    SD+  ++  N++ SKL LL L FP LRI+WS S + T+ IF  LKA + EPD A A  +G+ +             YN + ++ L  LP +T  NYR++   G K + + +     + +EL+G
Sbjct:  724 RLYSQCEAMTEYYEIPVLLIEFEQHQSFTSPPFSDLSSEIGKNDVQSKLVLLTLSFPNLRIVWSSSAYVTSIIFQDLKAMEQEPDPASAASIGLEA------GQDSTNTYNQAPLDLLMGLPYITMKNYRNVFYGGVKDIQEASETSERKWSELIG 873          
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_DROME (DNA repair endonuclease XPF OS=Drosophila melanogaster GN=mei-9 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.702e-24
Identity = 67/169 (39.64%), Postives = 95/169 (56.21%), Query Frame = 3
Query:    3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDDVTPNN--IISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFL 503
            RLY+Q   M R+Y  P+LLIEF Q+K F  Q    +    +  N  I+ KL LL LHFP+LR+IWSPS +ATA++F  LK  + EPD   A  +G  S++      +   ++N+   +FL RLPGV   N   ++    SL  L L   + L EL+  Q++A+ L D L
Sbjct:  754 RLYNQCVQMQRHYAKPILLIEFDQNKPFHLQGKFMLSQQTSMANADIVQKLQLLTLHFPKLRLIWSPSPYATAQLFEELKLGKPEPDPQTAAALG--SDEPTAGEQL---HFNSGIYDFLLRLPGVHTRNIHGLLRKGGSLRQLLLRSQKELEELLQSQESAKLLYDIL 917          
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: XPF_DICDI (DNA repair endonuclease XPF OS=Dictyostelium discoideum GN=ercc4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.478e-19
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 3
Query:    3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASDIGDD-VTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRAENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELM 464
            RL+ Q+E M R Y+ P+LLIEF  ++ F   +  ++  D ++P ++ SKL  L   FPRLR+IWS S + T +I+  +K    EPD         PS   ++      +NYN +A + LR +PGV D N   IMD    L  L+ L +   + +M
Sbjct:  796 RLFTQIEAMNRIYKNPILLIEFDPNQPFYLVAPDELQKDYLSPFSLPSKLVFLTKTFPRLRVIWSRSYYCTTKIYDQIKDGYPEPD---------PSMVNVIPEVNDDQNYNFNAQDVLRTMPGVNDKNINLIMDNVDDLYHLSKLSLSEFSTIM 941          
BLAST of FC873317 vs. ExPASy Swiss-Prot
Match: RAD1_YEAST (DNA repair protein RAD1 OS=Saccharomyces cerevisiae GN=RAD1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.072e-13
Identity = 54/183 (29.51%), Postives = 86/183 (46.99%), Query Frame = 3
Query:    3 RLYHQVETMVRYYRIPVLLIEFSQDKSFSFQSASD--------------IGDDVTPNNIISKLSLLVLHFPRLRIIWSPSLHATAEIFAALKANQDEPDEAKAIRVGVPSEDGIVENDVRA--ENYNTSAVEFLRRLPGVTDSNYRSIMDGCKSLADLALLPVERLAELMGGQKAAQTLRDFL 503
            RL +Q + M++YY  P LLIEF + +SFS +  S+              I   ++ + I  KL+ LVL FP L+IIWS S   T  I   LK  +++PD + A+ +G         +  +   +  N S  + L  +PGV+  +Y ++    KS   L  L    + EL+  +     +  FL
Sbjct:  878 RLANQCKKMLKYYAYPTLLIEFDEGQSFSLEPFSERRNYKNKDISTVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDPSNAVILGTNKVRSDFNSTAKGLKDGDNESKFKRLLNVPGVSKIDYFNLRKKIKSFNKLQKLSWNEINELINDEDLTDRIYYFL 1060          
The following BLAST results are available for this feature:
BLAST of FC873317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
XPF_ARATH1.469e-7983.43DNA repair endonuclease UVH1 OS=Arabidopsis thalia... [more]
XPF_MOUSE6.047e-3344.00DNA repair endonuclease XPF OS=Mus musculus GN=Erc... [more]
XPF_HUMAN3.001e-3243.27DNA repair endonuclease XPF OS=Homo sapiens GN=ERC... [more]
XPF_CRIGR2.541e-3143.27DNA repair endonuclease XPF OS=Cricetulus griseus ... [more]
RAD16_SCHPO5.131e-2439.74DNA repair protein rad16 OS=Schizosaccharomyces po... [more]
XPF_DROME6.702e-2439.64DNA repair endonuclease XPF OS=Drosophila melanoga... [more]
XPF_DICDI8.478e-1935.48DNA repair endonuclease XPF OS=Dictyostelium disco... [more]
RAD1_YEAST1.072e-1329.51DNA repair protein RAD1 OS=Saccharomyces cerevisia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI1BE02FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BE02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873317 ID=FC873317; Name=FC873317; organism=Citrus clementina; type=EST; length=824bp
GCCGCCTTTATCACCAAGTGGAAACAATGGTCCGCTATTACAGAATACCT
GTTCTTCTGATTGAGTTTTCACAAGACAAAAGCTTTTCATTTCAGTCTGC
AAGTGATATTGGTGATGATGTGACACCAAATAATATTATATCCAAGTTGT
CGCTGCTTGTTCTACATTTTCCTCGCTTGAGAATCATCTGGTCTCCCAGT
TTGCATGCAACTGCTGAAATATTTGCTGCACTGAAAGCAAATCAAGATGA
ACCTGACGAGGCAAAGGCAATTAGAGTTGGTGTCCCCTCCGAAGATGGTA
TAGTGGAAAATGATGTGAGAGCCGAAAATTACAATACATCTGCTGTGGAG
TTCCTAAGGCGGCTCCCTGGTGTGACAGATTCAAACTACAGGTCTATAAT
GGATGGATGTAAGAGCTTGGCTGACCTGGCCCTCCTACCAGTAGAAAGGC
TAGCTGAACTAATGGGTGGTCAGAAAGCTGCGCAGACTCTCAGAGATTTT
CTTGATGCCAAGTATCCAACATTACTATAGTACTCACCAAATCTCAACTG
GGACTCTGGAACAGAGGCTGTAAGTAATTTATTCAATGTTGTTTTATTTT
ATTTTTCTCATGTGTCATTGTTATTGGTGTAGAGTGGGTAATGAGAGCAC
TTTGCCTTTCCCATTTGTATTGTATTTTTTAGTCATCAAATGTAATTTTT
CTTTTGGAGAGATTAGTTTGCCATTTCACAGGCTTACTAGTTGCTGTTGT
ATAAGAAAATGTAACGTCAGAAACTAATGGGAAAAAATTTTAATATTCTT
TTAAAAAAAAAAAAAAAAAAAAAA
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