FC873335

Overview
NameFC873335
Unique NameFC873335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC873335_ssr121 microsatellite FC873335_ssr121:121..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12799 contig Ccv1_Contig12799:473..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873335 vs. ExPASy Swiss-Prot
Match: EIF3A_ARATH (Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana GN=TIF3A1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.393e-17
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 2
Query:  518 EMIPFFDFAVVEKISVEAVKHNFIAMKIDHMKGVVVFCNLGLESDGLLDHLTIF 679
            +++PFF F+ VEKISV+AVK+NF+AMK+DHMKGVV+F NLG+ESDGL DHL +F
Sbjct:  472 QLVPFFQFSEVEKISVDAVKNNFVAMKVDHMKGVVIFGNLGIESDGLRDHLAVF 525          
BLAST of FC873335 vs. ExPASy Swiss-Prot
Match: EIF3A_MAIZE (Eukaryotic translation initiation factor 3 subunit A OS=Zea mays GN=TIF3A1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.013e-13
Identity = 34/52 (65.38%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  521 MIPFFDFAVVEKISVEAVKHNFIAMKIDHMKGVVVFCNLGLESDGLLDHLTI 676
            MIPFFDF+VVEKISV+A K NF+A+K+DH+ GVV F  + +ESDGL DHL++
Sbjct:  471 MIPFFDFSVVEKISVDAAKQNFVAIKVDHLSGVVQFGTVDIESDGLSDHLSV 522          
The following BLAST results are available for this feature:
BLAST of FC873335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EIF3A_ARATH4.393e-1770.37Eukaryotic translation initiation factor 3 subunit... [more]
EIF3A_MAIZE1.013e-1365.38Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AB10FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AB10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873335 ID=FC873335; Name=FC873335; organism=Citrus clementina; type=EST; length=683bp
TGCAGTTTTGTCCTATGAAGATCCAGCTGCTGCACATGCTGCTGGTGGTT
TTTTCCAAGATCATGAAATAAGAGGTTACAAAATCAGTGTGGTGATGGCA
GAGAAGACTGCACTGAAAACTGGTGGTGGTGGTGGCGGTGGTAGAGGGGG
CTATGGCAATGGTGGAGACAGGCGCAGGGATAATTATAGAGATGGTGGTG
GGCCAGATAGACATCAACATGGTGGAAACCGTTCGCGCCCATATTGAAAA
ATTTCTCTTTTTATGTACTAGAGAATTATGGTCTGAGAGTTTTTAATTGT
GTTACAATCGCGGGATTGTTCTTGAAATGGAGAGGAAAGAGGTAGGTTGT
TCACTTATTCAGGATAGACAATACCCCCTTTTTCTCCTTTCTCATTTATC
TACCGCAACGTGGAGGGTAATCTATTCTAGGCGTGGGATTGATTAGTTGT
GAATGTTTTTATAGAGGCAAGTGGATAACCAAAATATCTTTGCAGCTATG
GTATGATATTTTCATGTGAAATGATTCCTTTCTTTGATTTTGCTGTCGTG
GAGAAAATTTCTGTTGAAGCTGTGAAACATAATTTCATAGCTATGAAAAT
TGACCATATGAAAGGTGTTGTAGTTTTTTGTAATTTGGGCCTTGAATCTG
ACGGCCTTTTGGATCACCTGACTATTTTTGAAA
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