FC873342

Overview
NameFC873342
Unique NameFC873342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length844
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1105 contig Ccv1_Contig1105:2..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTHC_ARATH (Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2)

HSP 1 Score: 336.265 bits (861), Expect = 1.324e-91
Identity = 161/202 (79.70%), Postives = 183/202 (90.59%), Query Frame = 1
Query:  118 KPKQQQ-QHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKPMEQ 720
            KPK    Q PWLIVGLGNPGK+Y GTRHNVGFEMVDA+A+AEGIS+++VNFKA FGKG IGN+P+MLAKPQTFMN SG+SVG IVS+YKIPLKQVLV++DDLDLPF K+RLLPKGGHGGHNGMRSIID  KGSR+FPRLRIGIGRPPGKMD+ NFVLR F++QE++ELD TFQ G+EA+RILLLEGFNK+ATFVNT K MEQ
Sbjct:   85 KPKSPPLQLPWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNTRKSMEQ 286          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTHM_ORYSJ (Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.491e-84
Identity = 145/192 (75.52%), Postives = 172/192 (89.58%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVNTAKPME 717
            PWL VGLGNPGK Y GTRHNVGFEM+D IAEAEGIS+SS+ FKA  GKG IG+ P+MLAKPQTFMNASG+SVG +VSY+KIPL QVLV++DDLDLPF+K+RLLPKGGHGGHNG+RSII+H K +R+FPRLRIGIGRPPGKMD  NFVLRPF+++E++ELDF F +G+EAVRI+ LEGFNK+AT+VNTA+  E
Sbjct:   55 PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQSSE 246          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTHM_ARATH (Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.291e-58
Identity = 99/186 (53.23%), Postives = 142/186 (76.34%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            PWL +GLGNPG +Y GTRHN+GFEM+D  AE+ GI ++ VNFKA  G+GF+ ++PV+LAKPQT+MN SG+S G + +YYK+PL +VLV+ DD+ LP   +RL  KGGHG HNG++S+++HF+G+REF RLRIGIG+PPG+MD   F+L+ FS   R+ +D    +GV+A++++L + F ++    N
Sbjct:   18 PWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFN 203          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2_MAIZE (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.250e-57
Identity = 100/179 (55.87%), Postives = 138/179 (77.09%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFN 678
            PWLI GLGNPG +Y GTRHNVGFEMVD IA  EGI+++++  K+  G G IG VPV++ KPQ++MN SG+++G + +YY++PL+ +L+I+DD  LP   +RL  KGGHG HNG++++I+H  G REFPRL IGIG PPGKMD   F+L+ FS +ER ++D   +QGV+AVR L+L+GF+
Sbjct:   61 PWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 239          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2B_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.105e-57
Identity = 99/186 (53.23%), Postives = 141/186 (75.81%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            PWLIVGLGNPG +Y+GTRHNVGFEM+D +A  EG+ ++++  KA  G G I +VP++LAKPQT+MN SG+SVGS+ S+Y++PL+ +L+I+D++ LP   +RL PKGG G HNG++S++ H  G R FPRL IGIG+PPG MD   F+L+ FS  E+++++   +QG EAV+ L+L GFN+  +  N
Sbjct:   45 PWLIVGLGNPGNKYHGTRHNVGFEMIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFN 230          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2_ORYSJ (Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.861e-56
Identity = 97/188 (51.60%), Postives = 142/188 (75.53%), Query Frame = 1
Query:  115 PKPKQQQQHPWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFN 678
            P  +  +  PWLI GLGNPG +Y+GTRHNVGFEMVD IA  EGI+++++  K+  G G IG VPV+L KPQ+++N SG+++G + +YY++PL+ +LV++D++ LP   +RL  KGGHG HNG++++++    SRE PRL IGIG PPGKMD+  F+L+ FS +ER ++D   +QGV+AVR L+L+GF+
Sbjct:   55 PAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFS 242          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: CRS2A_ARATH (Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.765e-54
Identity = 97/186 (52.15%), Postives = 135/186 (72.58%), Query Frame = 1
Query:  142 PWLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            PWLIVGLGNPG +Y GTRHN+GFEM+D IA A  IS++++  KA  G G +G VP++L KPQ +MN SG+SVG + +YY+IPL+ +L+I+DD+ L    +RL PKGGH  HNG++++ +H  G R +PRL IGIG PPG MD   F+L+ FS  ER+++D   +QGVE V+ L+ EGF+ + +  N
Sbjct:   51 PWLIVGLGNPGLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFN 236          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CARHZ (Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pth PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 9.295e-45
Identity = 94/185 (50.81%), Postives = 126/185 (68.11%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKIPLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            ++I GLGNPG++Y  TRHN GF +VD +A+  GI ++   FK+  G+G I  V V+L KPQT+MN SG +V   VS+YK+PL +++V++DDLDLP  K+RL  KG  GGH GM SII    GS E PRL+IGIGR P   D  ++VL+PF+  ER+ L+ T +   EA+ + L EGFNKA T  N
Sbjct:    2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKPQTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGR-PAVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAMTDFN 184          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CHLAD (Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.704e-44
Identity = 89/186 (47.85%), Postives = 125/186 (67.20%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            WLIVGLGNPG++Y  TRHN+GF  V+ +AE  G++  +   K+   +G I    V L KPQT+MN SGQ+V ++  +YKI P +++LVI+DDLDLPF+K+RL  +G  G HNGMRSI+    G+ EFPRLRIGIG+PPG+MD+ ++VL  F+ +E   L     +  +AV +++ EG   A    N
Sbjct:    2 WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKPQTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQL-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTAAMNRYN 186          
BLAST of FC873342 vs. ExPASy Swiss-Prot
Match: PTH_CHLSY (Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pth PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.613e-44
Identity = 90/186 (48.39%), Postives = 125/186 (67.20%), Query Frame = 1
Query:  145 WLIVGLGNPGKQYNGTRHNVGFEMVDAIAEAEGISVSSVNFKAHFGKGFIGNVPVMLAKPQTFMNASGQSVGSIVSYYKI-PLKQVLVIFDDLDLPFSKMRLLPKGGHGGHNGMRSIIDHFKGSREFPRLRIGIGRPPGKMDSVNFVLRPFSKQERQELDFTFQQGVEAVRILLLEGFNKAATFVN 699
            WLIVGLGNPG++Y  TRHN+GF  VD +AE  G++       +   +G I    V+LAKPQT+MN SGQ+V ++ ++YKI P +++LVI+DDLDLPF+K+R+  +G  G HNGMRSI+    G+ EFPRLR+GIG+PPGKMD+ ++VL  F+  E   L     +  +AV ++L EG   A    N
Sbjct:    2 WLIVGLGNPGERYARTRHNIGFRSVDTLAERHGLTFRPQRANSQLAEGNIYGQRVVLAKPQTYMNLSGQAVVALCNWYKIDPARELLVIYDDLDLPFAKLRIRERGSAGTHNGMRSIVAQL-GTTEFPRLRVGIGQPPGKMDAADYVLGRFTPDEEAALPDLLGRIADAVEVILREGLTTAMNRYN 186          
The following BLAST results are available for this feature:
BLAST of FC873342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PTHC_ARATH1.324e-9179.70Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidop... [more]
PTHM_ORYSJ3.491e-8475.52Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sa... [more]
PTHM_ARATH3.291e-5853.23Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidop... [more]
CRS2_MAIZE1.250e-5755.87Chloroplastic group IIB intron splicing facilitato... [more]
CRS2B_ARATH8.105e-5753.23Chloroplastic group IIB intron splicing facilitato... [more]
CRS2_ORYSJ6.861e-5651.60Chloroplastic group IIB intron splicing facilitato... [more]
CRS2A_ARATH3.765e-5452.15Chloroplastic group IIB intron splicing facilitato... [more]
PTH_CARHZ9.295e-4550.81Peptidyl-tRNA hydrolase OS=Carboxydothermus hydrog... [more]
PTH_CHLAD2.704e-4447.85Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans ... [more]
PTH_CHLSY4.613e-4448.39Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI1BF10FM2 AbsDev Citrus clementina cDNA clone KN0AAI1BF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873342 ID=FC873342; Name=FC873342; organism=Citrus clementina; type=EST; length=844bp
AAGCATTCTCCTTTGTGCTGTTGGGGAAGACGAACAAGGATGTCTCGGTC
GCCATCAAATTCCACAATTAGGAATTTTTCATCATCAATAAGCAACGAAG
AATCTTTGGTTTCACCTAAGCCAAAGCAGCAGCAACAGCACCCGTGGCTC
ATTGTTGGGCTCGGTAACCCCGGCAAGCAGTACAATGGCACTCGACACAA
TGTGGGATTTGAAATGGTGGATGCAATTGCTGAAGCTGAAGGAATATCTG
TGAGCTCTGTTAATTTTAAAGCCCATTTTGGAAAAGGTTTTATCGGAAAT
GTTCCAGTAATGCTTGCGAAACCACAAACTTTTATGAACGCAAGTGGTCA
GTCTGTTGGGTCCATTGTATCCTATTACAAGATTCCATTGAAGCAAGTAC
TCGTGATATTCGATGACTTAGATTTGCCTTTTTCCAAAATGCGTCTGCTG
CCAAAAGGTGGACATGGAGGACACAATGGCATGAGGAGTATCATTGACCA
CTTTAAAGGGAGCCGTGAATTTCCTCGTTTAAGAATTGGGATTGGACGGC
CACCTGGGAAAATGGATAGTGTAAATTTTGTGCTTCGCCCTTTCAGTAAA
CAAGAGCGTCAAGAGTTGGATTTTACATTTCAACAAGGTGTTGAAGCAGT
GCGGATTCTTTTGCTTGAAGGTTTTAATAAAGCCGCTACATTTGTTAACA
CAGCAAAGCCAATGGAACAACTTAGTTAACTTACTGGTAAGTTATCATTA
TTTTTGTAATTACAAGTGGATGTGCTCGGGGAAAAGTGATTATGCATTGT
ATCAATCCTTGTTCCCCTTGTGAGACAAACTGGGGTAATCGATG
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